Detailed information NTG0685032

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OM087_RS19750
• Genome accession: NZ_CP110511
• Coordinates: 4109134..4110126 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ws5-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4104134..4115126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OM087_RS19720 (OM087_19640)	ispD	4104195..4104905 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OM087_RS19725 (OM087_19645)	ispF	4104905..4105384 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OM087_RS19730 (OM087_19650)	truD	4105381..4106430 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OM087_RS19735 (OM087_19655)	surE	4106411..4107172 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OM087_RS19740 (OM087_19660)	pcm	4107166..4107792 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OM087_RS19745 (OM087_19665)	nlpD	4107977..4109071 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
OM087_RS19750 (OM087_19670)	rpoS	4109134..4110126 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OM087_RS19755 (OM087_19675)	ygbN	4110220..4111584 (-)	1365	WP_000104439.1	GntP family transporter	-
OM087_RS19760 (OM087_19680)	ygbM	4111673..4112449 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
OM087_RS19765 (OM087_19685)	ygbL	4112454..4113092 (-)	639	WP_001278994.1	aldolase	-
OM087_RS19770 (OM087_19690)	otnK	4113089..4114351 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=685032 OM087_RS19750 WP_000081550.1 4109134..4110126(+) (rpoS) [Escherichia coli strain ws5-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=685032 OM087_RS19750 WP_000081550.1 4109134..4110126(+) (rpoS) [Escherichia coli strain ws5-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715