Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M2R49_RS08750 Genome accession   NZ_CP096905
Coordinates   1875299..1875928 (+) Length   209 a.a.
NCBI ID   WP_043001157.1    Uniprot ID   A0A3S7DAA7
Organism   Citrobacter amalonaticus strain RSHH22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870299..1880928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2R49_RS08730 (M2R49_08725) - 1870686..1872446 (-) 1761 WP_054177186.1 AAA family ATPase -
  M2R49_RS08735 (M2R49_08730) matP 1872632..1873084 (+) 453 WP_043001159.1 macrodomain Ter protein MatP -
  M2R49_RS08740 (M2R49_08735) ompA 1873161..1874216 (-) 1056 WP_043001975.1 porin OmpA -
  M2R49_RS08745 (M2R49_08740) sulA 1874572..1875081 (-) 510 WP_043001158.1 SOS-induced cell division inhibitor SulA -
  M2R49_RS08750 (M2R49_08745) sxy/tfoX 1875299..1875928 (+) 630 WP_043001157.1 TfoX/Sxy family DNA transformation protein Regulator
  M2R49_RS08755 (M2R49_08750) yccS 1875882..1878044 (-) 2163 WP_046401452.1 YccS family putative transporter -
  M2R49_RS08760 (M2R49_08755) - 1878051..1878509 (-) 459 WP_043001155.1 YccF domain-containing protein -
  M2R49_RS08765 (M2R49_08760) helD 1878633..1880687 (+) 2055 WP_044256301.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24229.11 Da        Isoelectric Point: 9.4514

>NTDB_id=685008 M2R49_RS08750 WP_043001157.1 1875299..1875928(+) (sxy/tfoX) [Citrobacter amalonaticus strain RSHH22]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDTLWRDQQQLIQLSKFSLDAALQEKLSRSSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPVPMSVEKSE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=685008 M2R49_RS08750 WP_043001157.1 1875299..1875928(+) (sxy/tfoX) [Citrobacter amalonaticus strain RSHH22]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGTTACAGTCTGACAATCAGGAATACCGTCTTTGCGATGGTTGCCAATGGGGAGCTCTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCGGTCTGGCTGACGTTTCTTAAACGCGGGCGTCCGGTCATGCTTAAT
TATTATCAGGTTGATGACACTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTGTCGAAGTTTTCGCTGGATGCCGCGTT
GCAGGAGAAGTTGTCCCGCAGTTCTCAGCAGCGGCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGAAGCGGGGATCTACGACGTCGCCACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTGCGACAAATGAAC
AAATCCATCACTGACAAGGTGCTGTTTAATCTTGAAGGGGCTATTTATGGTATCCATGAAGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCGCCGGTGCCGATGTCGGTGGAGAAGAGTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S7DAA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.5

95.694

0.675