Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M1Y13_RS15470 Genome accession   NZ_CP096902
Coordinates   3093118..3093747 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RSHH22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088118..3098747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1Y13_RS15455 (M1Y13_15460) helD 3088360..3090414 (-) 2055 WP_129541778.1 DNA helicase IV -
  M1Y13_RS15460 (M1Y13_15465) yccF 3090537..3090983 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M1Y13_RS15465 (M1Y13_15470) yccS 3090993..3093155 (+) 2163 WP_000875044.1 YccS family putative transporter -
  M1Y13_RS15470 (M1Y13_15475) sxy/tfoX 3093118..3093747 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M1Y13_RS15475 (M1Y13_15480) sulA 3093966..3094475 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M1Y13_RS15480 (M1Y13_15485) ompA 3094832..3095884 (+) 1053 WP_129541777.1 porin OmpA -
  M1Y13_RS15485 (M1Y13_15490) matP 3095959..3096411 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  M1Y13_RS15490 (M1Y13_15495) ycbZ 3096597..3098357 (+) 1761 WP_129541776.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=684993 M1Y13_RS15470 WP_000839153.1 3093118..3093747(-) (sxy/tfoX) [Escherichia coli strain RSHH22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=684993 M1Y13_RS15470 WP_000839153.1 3093118..3093747(-) (sxy/tfoX) [Escherichia coli strain RSHH22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1