Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M1783_RS17635 Genome accession   NZ_CP096894
Coordinates   3641037..3641855 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Mu1956     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636037..3646855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1783_RS17620 (M1783_17620) pilE 3636254..3636679 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  M1783_RS17625 (M1783_17625) pilY2 3636676..3637158 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M1783_RS17630 (M1783_17630) pilY1 3637171..3641025 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M1783_RS17635 (M1783_17635) pilX 3641037..3641855 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M1783_RS17640 (M1783_17640) pilW 3641852..3642853 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1783_RS17645 (M1783_17645) pilV 3642854..3643414 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1783_RS17650 (M1783_17650) fimU 3643408..3643881 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1783_RS17655 (M1783_17655) ispH 3644051..3645001 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1783_RS17660 (M1783_17660) gmk 3645124..3645753 (+) 630 WP_000015937.1 guanylate kinase -
  M1783_RS17665 (M1783_17665) rpoZ 3645826..3646104 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1783_RS17670 (M1783_17670) - 3646143..3646272 (+) 130 Protein_3442 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=684969 M1783_RS17635 WP_000149374.1 3641037..3641855(-) (pilX) [Acinetobacter baumannii strain Mu1956]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=684969 M1783_RS17635 WP_000149374.1 3641037..3641855(-) (pilX) [Acinetobacter baumannii strain Mu1956]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993