Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OMP06_RS15955 Genome accession   NZ_CP110462
Coordinates   3355619..3356134 (+) Length   171 a.a.
NCBI ID   WP_265167608.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350619..3361134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS15935 (OMP06_15935) - 3350947..3352407 (+) 1461 WP_000004976.1 amino acid permease -
  OMP06_RS15940 (OMP06_15940) - 3352684..3353889 (+) 1206 WP_000512711.1 RtcB family protein -
  OMP06_RS15945 (OMP06_15945) - 3353908..3354051 (+) 144 WP_162138624.1 hypothetical protein -
  OMP06_RS15950 (OMP06_15950) omp38 3354176..3355237 (-) 1062 WP_000777885.1 outer membrane protein Omp38 -
  OMP06_RS15955 (OMP06_15955) fimT 3355619..3356134 (+) 516 WP_265167608.1 GspH/FimT family pseudopilin Machinery gene
  OMP06_RS15960 (OMP06_15960) - 3356243..3357418 (+) 1176 WP_000129968.1 thiolase family protein -
  OMP06_RS15965 (OMP06_15965) - 3357545..3357988 (+) 444 WP_001176580.1 VOC family protein -
  OMP06_RS15970 (OMP06_15970) - 3358031..3358384 (-) 354 WP_000457781.1 multidrug efflux SMR transporter -
  OMP06_RS15975 (OMP06_15975) - 3358466..3358951 (-) 486 WP_000935250.1 DUF934 domain-containing protein -
  OMP06_RS15980 (OMP06_15980) - 3358944..3360587 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19636.88 Da        Isoelectric Point: 8.8196

>NTDB_id=684940 OMP06_RS15955 WP_265167608.1 3355619..3356134(+) (fimT) [Acinetobacter baumannii strain RBH2]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKTKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSLDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=684940 OMP06_RS15955 WP_265167608.1 3355619..3356134(+) (fimT) [Acinetobacter baumannii strain RBH2]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCCTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAACCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTAGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTCTAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGACATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(51-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421