Detailed information NTG0684911

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: EFK13_RS19275
• Genome accession: NZ_CP096889
• Coordinates: 3770926..3772071 (+)
• Length: 381 a.a.
• NCBI ID: WP_129507283.1
• Uniprot ID: -
• Organism: Bacillus cabrialesii strain TE3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3772799..3773949	3770926..3772071	flank	728

Gene organization within MGE regions

Location: 3770926..3773949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EFK13_RS19275 (EFK13_19275)	rapF	3770926..3772071 (+)	1146	WP_129507283.1	tetratricopeptide repeat protein	Regulator
EFK13_RS19280 (EFK13_19280)	-	3772055..3772174 (+)	120	WP_129507282.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
EFK13_RS19285 (EFK13_19285)	-	3772254..3772661 (+)	408	Protein_3746	YbaK/EbsC family protein	-
EFK13_RS19290 (EFK13_19290)	-	3772799..3773949 (+)	1151	WP_248894257.1	IS3 family transposase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45681.33 Da
• Isoelectric Point: 5.0738

>NTDB_id=684911 EFK13_RS19275 WP_129507283.1 3770926..3772071(+) (rapF) [Bacillus cabrialesii strain TE3]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDRREYVLAIQFFKKAESKLIFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAEAEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIRVFERSKMLPSLPQAFFLITQIYFKLGKMDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=684911 EFK13_RS19275 WP_129507283.1 3770926..3772071(+) (rapF) [Bacillus cabrialesii strain TE3]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAAGATCTTCATTTGTACTATT
CACTGATGGAATTTCGGCACAACCTGATGCTTGAGTATCTTGAACCGCTGGAAAAAATGCGGATCGAGGAACAGCCGAGA
TTGTCTGATTTACTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTTTTTAAGAAAGCAGAGAGCAAACTGATTTTTG
TAAAAGACAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTCTCG
ATGGACTATGCACGGCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATTAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATATGAGAAAGCAATTGCTCATTTTCAAAAAGCCTTTACACTTGCCGAGG
CAGAGCAGCAGCCGCAATTAATGGGAAGGACGCTTTATAACATAGCGCTCTGCAAACAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCGAGTATTTGAAAGATCTAAAATGCTCCCTTCTCTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATGGATAACGCTTGTGAATATCATAAAAAAGGAAAAGAATATTCAGCAG
CTGCGGGAGATACTGTGTACTTAACAGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTCGCACTTGATGTAGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_7) (265-288)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.632	99.738	0.575