Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EFK13_RS12850 Genome accession   NZ_CP096889
Coordinates   2526328..2527095 (-) Length   255 a.a.
NCBI ID   WP_129508219.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2521328..2532095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS12830 (EFK13_12830) - 2521500..2522312 (-) 813 WP_129508222.1 pyruvate, water dikinase regulatory protein -
  EFK13_RS12835 (EFK13_12835) ccpN 2522338..2522976 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  EFK13_RS12840 (EFK13_12840) glyS 2523110..2525149 (-) 2040 WP_129508221.1 glycine--tRNA ligase subunit beta -
  EFK13_RS12845 (EFK13_12845) glyQ 2525142..2526029 (-) 888 WP_129508220.1 glycine--tRNA ligase subunit alpha -
  EFK13_RS12850 (EFK13_12850) recO 2526328..2527095 (-) 768 WP_129508219.1 DNA repair protein RecO Machinery gene
  EFK13_RS12855 (EFK13_12855) - 2527132..2527275 (-) 144 WP_129508218.1 YqzL family protein -
  EFK13_RS12860 (EFK13_12860) era 2527421..2528326 (-) 906 WP_129508217.1 GTPase Era -
  EFK13_RS12865 (EFK13_12865) - 2528307..2528717 (-) 411 WP_003230049.1 cytidine deaminase -
  EFK13_RS12870 (EFK13_12870) - 2528836..2529207 (-) 372 WP_129508216.1 diacylglycerol kinase family protein -
  EFK13_RS12875 (EFK13_12875) ybeY 2529188..2529661 (-) 474 WP_129508215.1 rRNA maturation RNase YbeY -
  EFK13_RS12880 (EFK13_12880) pgpH 2529662..2531797 (-) 2136 WP_129508214.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.04 Da        Isoelectric Point: 8.5539

>NTDB_id=684887 EFK13_RS12850 WP_129508219.1 2526328..2527095(-) (recO) [Bacillus cabrialesii strain TE3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFKQLNEGTDPDVITFIAQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLTRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=684887 EFK13_RS12850 WP_129508219.1 2526328..2527095(-) (recO) [Bacillus cabrialesii strain TE3]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGTCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATTAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGATAAAGGCACAGAAGAAAAGAAGCC
TAACCCTTATTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCACATTCA
TTGCTCAAATGAAAATGCTCGGTGTCATGGGGCTATATCCTGAGCTGAATCATTGTGTGCATTGTAAAAGCCAAGACGGG
ACCTTTCATTTCTCTGTCCGCGATAACGGCTTTATTTGCCATCGCTGTTTTGAAAAAGATCCTTACAGGGTCCCGATTAA
ACCCCAAACGGCAAGGCTGTTGAGACTGTTTTATTACTTCGATCTGACGAGGCTGGGCAATGTGTCTTTAAAACAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTATGAAGAATATTCAGGGTTATATTTAAAATCGAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACACCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.863

100

0.969