Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EFK13_RS11315 Genome accession   NZ_CP096889
Coordinates   2256720..2257340 (+) Length   206 a.a.
NCBI ID   WP_129505355.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251720..2262340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS11275 (EFK13_11275) - 2252860..2253366 (-) 507 WP_129505361.1 PTS glucose transporter subunit IIA -
  EFK13_RS11280 (EFK13_11280) - 2253504..2253923 (+) 420 WP_129505360.1 Hsp20/alpha crystallin family protein -
  EFK13_RS11285 (EFK13_11285) - 2253944..2254312 (-) 369 WP_129505359.1 YppG family protein -
  EFK13_RS11290 (EFK13_11290) - 2254499..2254687 (+) 189 WP_064813638.1 YppF family protein -
  EFK13_RS11295 (EFK13_11295) - 2254728..2255099 (-) 372 WP_129505358.1 YppE family protein -
  EFK13_RS11300 (EFK13_11300) - 2255145..2255390 (-) 246 WP_129505357.1 DUF5446 family protein -
  EFK13_RS11305 (EFK13_11305) sspM 2255588..2255692 (+) 105 WP_024715286.1 acid-soluble spore protein SspM -
  EFK13_RS11310 (EFK13_11310) - 2255717..2256679 (-) 963 WP_129505356.1 DUF2515 domain-containing protein -
  EFK13_RS11315 (EFK13_11315) recU 2256720..2257340 (+) 621 WP_129505355.1 Holliday junction resolvase RecU Machinery gene
  EFK13_RS11320 (EFK13_11320) - 2257362..2260103 (+) 2742 WP_129505354.1 PBP1A family penicillin-binding protein -
  EFK13_RS11325 (EFK13_11325) - 2260179..2260673 (-) 495 WP_129505353.1 YpoC family protein -
  EFK13_RS11330 (EFK13_11330) nth 2260670..2261329 (-) 660 WP_003225594.1 endonuclease III -
  EFK13_RS11335 (EFK13_11335) dnaD 2261348..2262046 (-) 699 WP_129505352.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23966.12 Da        Isoelectric Point: 9.6511

>NTDB_id=684875 EFK13_RS11315 WP_129505355.1 2256720..2257340(+) (recU) [Bacillus cabrialesii strain TE3]
MIRYPNGKTFHPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAIIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAFPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=684875 EFK13_RS11315 WP_129505355.1 2256720..2257340(+) (recU) [Bacillus cabrialesii strain TE3]
GTGATTCGGTATCCTAACGGAAAAACGTTTCATCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCATCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAACATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAAGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGCAAAGATGAGTTAGAGGAAGCAGCTTTTCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.573

100

0.976