Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EFK13_RS08040 Genome accession   NZ_CP096889
Coordinates   1546941..1547219 (+) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541941..1552219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS08020 (EFK13_08020) - 1542586..1543938 (+) 1353 WP_129508246.1 IS1182 family transposase -
  EFK13_RS08025 (EFK13_08025) - 1544071..1545303 (-) 1233 WP_129505839.1 aminopeptidase -
  EFK13_RS08030 (EFK13_08030) - 1545415..1545549 (-) 135 WP_003238865.1 protein YkpC -
  EFK13_RS08035 (EFK13_08035) mreBH 1545651..1546658 (-) 1008 WP_064813003.1 cell shape-determining protein MreBH -
  EFK13_RS08040 (EFK13_08040) abrB 1546941..1547219 (+) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  EFK13_RS08045 (EFK13_08045) kinC 1547411..1548697 (+) 1287 WP_129505838.1 two-component sensor histidine kinase KinC -
  EFK13_RS08050 (EFK13_08050) - 1548713..1549540 (+) 828 WP_129505837.1 gamma-glutamylcyclotransferase -
  EFK13_RS08055 (EFK13_08055) ktrC 1549612..1550277 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  EFK13_RS08060 (EFK13_08060) ade 1550435..1552168 (+) 1734 WP_129505836.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=684870 EFK13_RS08040 WP_014663823.1 1546941..1547219(+) (abrB) [Bacillus cabrialesii strain TE3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=684870 EFK13_RS08040 WP_014663823.1 1546941..1547219(+) (abrB) [Bacillus cabrialesii strain TE3]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTCATGCCGATCGAATTAAGACGGGCACTTGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCCCATGGCGTTT
GTTTAATGACCGGAGAAATTACTTCAGAAAATAAAGATTACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576