Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   EFK13_RS07915 Genome accession   NZ_CP096889
Coordinates   1521274..1521858 (+) Length   194 a.a.
NCBI ID   WP_129505858.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516274..1526858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS07885 (EFK13_07885) dapD 1516461..1517171 (+) 711 WP_075745780.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EFK13_RS07890 (EFK13_07890) - 1517241..1518365 (+) 1125 WP_129505860.1 N-acetyldiaminopimelate deacetylase -
  EFK13_RS07895 (EFK13_07895) - 1518427..1518672 (+) 246 WP_075745784.1 YkuS family protein -
  EFK13_RS07900 (EFK13_07900) mscT 1518709..1519512 (-) 804 WP_064813001.1 small-conductance mechanosensitive channel protein MscT -
  EFK13_RS07905 (EFK13_07905) ahpA 1519756..1520298 (+) 543 WP_129505859.1 biofilm-specific peroxidase AhpA -
  EFK13_RS07910 (EFK13_07910) ykuV 1520367..1520825 (+) 459 WP_119997055.1 thiol-disulfide oxidoreductase YkuV -
  EFK13_RS07915 (EFK13_07915) rok 1521274..1521858 (+) 585 WP_129505858.1 transcriptional regulator Rok Regulator
  EFK13_RS07920 (EFK13_07920) - 1521899..1522864 (-) 966 WP_129505857.1 sporulation protein -
  EFK13_RS07925 (EFK13_07925) - 1523000..1523599 (+) 600 WP_129505856.1 molybdenum cofactor guanylyltransferase -
  EFK13_RS07930 (EFK13_07930) - 1523650..1524669 (+) 1020 WP_129505855.1 molybdopterin-synthase adenylyltransferase MoeB -
  EFK13_RS07935 (EFK13_07935) glp 1524687..1525979 (+) 1293 WP_129505854.1 gephyrin-like molybdotransferase Glp -
  EFK13_RS07940 (EFK13_07940) mobB 1525940..1526461 (+) 522 WP_129505853.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22155.18 Da        Isoelectric Point: 9.7036

>NTDB_id=684869 EFK13_RS07915 WP_129505858.1 1521274..1521858(+) (rok) [Bacillus cabrialesii strain TE3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESVESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=684869 EFK13_RS07915 WP_129505858.1 1521274..1521858(+) (rok) [Bacillus cabrialesii strain TE3]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAGTTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAGATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCAGACTCTCTGCCGGTTCTCGCTGAGCTAGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACGCGAAGAAG
AAGAGGAACGGCAAGACCGGGGTCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAGGAGATTGAAAAAGAAAGCGGTCTTGAAATTCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTATCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCTGTAGA
ATCAGCTGAATCTGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

98.454

100

0.985