Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   EFK13_RS06320 Genome accession   NZ_CP096889
Coordinates   1232220..1233173 (+) Length   317 a.a.
NCBI ID   WP_129506093.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227220..1238173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS06295 (EFK13_06295) argF 1229050..1229994 (+) 945 WP_129506097.1 ornithine carbamoyltransferase -
  EFK13_RS06300 (EFK13_06300) - 1230096..1230275 (+) 180 WP_010329358.1 YjzC family protein -
  EFK13_RS06305 (EFK13_06305) - 1230323..1230508 (-) 186 WP_129506096.1 YjzD family protein -
  EFK13_RS06310 (EFK13_06310) - 1230758..1231492 (+) 735 WP_129506095.1 hypothetical protein -
  EFK13_RS06315 (EFK13_06315) - 1231572..1232129 (+) 558 WP_129506094.1 hypothetical protein -
  EFK13_RS06320 (EFK13_06320) med 1232220..1233173 (+) 954 WP_129506093.1 transcriptional regulator Med Regulator
  EFK13_RS06325 (EFK13_06325) comZ 1233188..1233379 (+) 192 WP_129506092.1 ComZ family protein Regulator
  EFK13_RS06330 (EFK13_06330) - 1233409..1233636 (-) 228 WP_129506091.1 hypothetical protein -
  EFK13_RS06335 (EFK13_06335) fabH 1233801..1234739 (+) 939 WP_129506090.1 beta-ketoacyl-ACP synthase III -
  EFK13_RS06340 (EFK13_06340) fabF 1234762..1236003 (+) 1242 WP_129506089.1 beta-ketoacyl-ACP synthase II -
  EFK13_RS06345 (EFK13_06345) - 1236079..1236864 (+) 786 WP_129506088.1 DUF2268 domain-containing protein -
  EFK13_RS06350 (EFK13_06350) appD 1237053..1238039 (+) 987 WP_064813399.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35497.14 Da        Isoelectric Point: 4.8093

>NTDB_id=684859 EFK13_RS06320 WP_129506093.1 1232220..1233173(+) (med) [Bacillus cabrialesii strain TE3]
MIKRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKSKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSEL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTRVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=684859 EFK13_RS06320 WP_129506093.1 1232220..1233173(+) (med) [Bacillus cabrialesii strain TE3]
TTGATCAAAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAGTCAAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGCGGGGCGTCAATCTTCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACCTGGTCAGCGAAGATTA
TCCAGATATGGAATTCGTTATTTCTAATGCGAAATCGAAAGCTGATAATGTGACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTGATTGCTTCCTTTACATGGCAG
CCGGAGGTTGACGGTTTTATCAAAGGAGCCAAATATGAAAATCCGGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATACGACAGCAGTGAAGCTTTATCAAAAAATGAAGAATGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGCTACGTCACAGATCAATCGGAGCTG
GGCGAGAATACCGTCTTAACCAGCACGGTGCAGAATGTGGACAAGGCCTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAAAACGAGAGTTGTTGAAATGGGAACCTTCAGCCCGCTCGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

97.476

100

0.975