Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EFK13_RS05880 Genome accession   NZ_CP096889
Coordinates   1145582..1146160 (+) Length   192 a.a.
NCBI ID   WP_064813485.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140582..1151160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS05860 (EFK13_05860) hemAT 1141093..1142391 (-) 1299 WP_129506177.1 heme-based aerotactic transducer HemAT -
  EFK13_RS05865 (EFK13_05865) - 1142530..1144059 (-) 1530 WP_129506176.1 FAD-dependent oxidoreductase -
  EFK13_RS05870 (EFK13_05870) - 1144171..1145028 (+) 858 WP_064813486.1 SDR family oxidoreductase -
  EFK13_RS05875 (EFK13_05875) - 1145056..1145289 (-) 234 WP_003239440.1 IDEAL domain-containing protein -
  EFK13_RS05880 (EFK13_05880) comK 1145582..1146160 (+) 579 WP_064813485.1 competence transcription factor ComK Regulator
  EFK13_RS05885 (EFK13_05885) - 1146206..1147105 (-) 900 WP_129506253.1 SDR family oxidoreductase -
  EFK13_RS05890 (EFK13_05890) - 1147312..1147581 (+) 270 WP_075745198.1 excalibur calcium-binding domain-containing protein -
  EFK13_RS05895 (EFK13_05895) - 1147624..1149093 (-) 1470 WP_129506175.1 sodium:solute symporter -
  EFK13_RS05900 (EFK13_05900) - 1149090..1149290 (-) 201 WP_129506174.1 DUF3311 domain-containing protein -
  EFK13_RS05905 (EFK13_05905) - 1149504..1149866 (-) 363 WP_129506173.1 hypothetical protein -
  EFK13_RS05910 (EFK13_05910) - 1150019..1150642 (+) 624 WP_064813479.1 TVP38/TMEM64 family protein -
  EFK13_RS05915 (EFK13_05915) lepB 1150644..1151150 (+) 507 WP_129506172.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22406.70 Da        Isoelectric Point: 7.2411

>NTDB_id=684856 EFK13_RS05880 WP_064813485.1 1145582..1146160(+) (comK) [Bacillus cabrialesii strain TE3]
MSQKTDAPLESYEVNGETIAVLPEEIDGKICSKIIEKDCVLYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=684856 EFK13_RS05880 WP_064813485.1 1145582..1146160(+) (comK) [Bacillus cabrialesii strain TE3]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTAAACGGCGAAACCATTGCCGTGCTGCCAGAAGAAATTGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGACTGCGTGTTATACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTTAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGGAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAAGACCGTATCGAACAC
CGTGTGCCAAAACGGCAGGAATTTATGCTGTATCCAAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969