Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   EFK13_RS04790 Genome accession   NZ_CP096889
Coordinates   947795..948586 (+) Length   263 a.a.
NCBI ID   WP_129506327.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 942795..953586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS04760 (EFK13_04760) - 943635..944666 (+) 1032 WP_129506332.1 iron ABC transporter permease -
  EFK13_RS04765 (EFK13_04765) - 944781..945662 (+) 882 WP_129506331.1 PhzF family phenazine biosynthesis isomerase -
  EFK13_RS04770 (EFK13_04770) - 945749..946333 (+) 585 WP_129506330.1 nitroreductase -
  EFK13_RS04775 (EFK13_04775) - 946372..946563 (-) 192 WP_129506329.1 YfhD family protein -
  EFK13_RS04780 (EFK13_04780) - 946630..946740 (-) 111 WP_003223230.1 YfhE family protein -
  EFK13_RS04785 (EFK13_04785) - 946795..947706 (-) 912 WP_129506328.1 TIGR01777 family oxidoreductase -
  EFK13_RS04790 (EFK13_04790) recX 947795..948586 (+) 792 WP_129506327.1 recombination regulator RecX Regulator
  EFK13_RS04795 (EFK13_04795) - 948594..948914 (+) 321 WP_129506326.1 YfhH family protein -
  EFK13_RS04800 (EFK13_04800) - 949050..950243 (+) 1194 WP_129506325.1 MFS transporter -
  EFK13_RS04805 (EFK13_04805) - 950277..950429 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  EFK13_RS04810 (EFK13_04810) - 950554..950823 (+) 270 WP_024715679.1 YfhJ family protein -
  EFK13_RS04815 (EFK13_04815) - 950967..951485 (+) 519 WP_129506324.1 SH3 domain-containing protein -
  EFK13_RS04820 (EFK13_04820) - 951572..951904 (+) 333 WP_129506323.1 SdpI family protein -
  EFK13_RS04825 (EFK13_04825) - 951891..952751 (+) 861 WP_129506322.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30888.12 Da        Isoelectric Point: 6.6695

>NTDB_id=684851 EFK13_RS04790 WP_129506327.1 947795..948586(+) (recX) [Bacillus cabrialesii strain TE3]
MPFITKISAQKKNTERFNIFLDEKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALEFLSYRMRSTKEV
EDHLKKKETSAPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQMQLQRKGFSFDVISAAMEQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=684851 EFK13_RS04790 WP_129506327.1 947795..948586(+) (recX) [Bacillus cabrialesii strain TE3]
ATGCCATTTATTACAAAAATATCAGCGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGAAAAATACGCCTT
CAGCGTGGACGCGGACGTGCTCGTAAAATTTGAGCTCAAAAAGGGAAAAGAGCTCGATGATCTAGACATCATTGAGATTC
AATACGGAGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGAATTTTTATCCTACCGCATGAGATCAACGAAAGAGGTT
GAGGACCATTTAAAGAAAAAAGAAACCTCGGCGCCGGTTATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCGGCTTATGTCAGCACCCACAAAAAAACGAACGGAAAAGGACCTGACGTTTTGTTCAGAG
AGCTGAGAGCAAAGGGGATCGACGACGATACAATTAAGGAGGCGCTGAGTTCCTTTTCCTTTGAAGATCAGACGAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAACTTTCGACGAAAGAGCTTAAACAGCGCGCCCAGATGCA
GCTTCAGCGCAAAGGCTTCTCATTTGATGTCATCAGCGCGGCTATGGAGCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGTGCCATGAAG
GTCAAACAATTTTTGTTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

97.338

100

0.973