Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   EFK13_RS02130 Genome accession   NZ_CP096889
Coordinates   398898..399296 (-) Length   132 a.a.
NCBI ID   WP_064815182.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 393898..404296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS02100 (EFK13_02100) - 394858..395295 (+) 438 WP_129506755.1 RDD family protein -
  EFK13_RS02105 (EFK13_02105) - 395397..395729 (+) 333 WP_129506754.1 YckD family protein -
  EFK13_RS02110 (EFK13_02110) - 395856..396278 (+) 423 WP_129506753.1 MarR family transcriptional regulator -
  EFK13_RS02115 (EFK13_02115) - 396266..396607 (+) 342 WP_129506752.1 DUF3147 family protein -
  EFK13_RS02120 (EFK13_02120) - 396627..397355 (+) 729 WP_129506751.1 AAA family ATPase -
  EFK13_RS02125 (EFK13_02125) bglC 397428..398861 (+) 1434 WP_129506750.1 6-phospho-beta-glucosidase -
  EFK13_RS02130 (EFK13_02130) nin/comJ 398898..399296 (-) 399 WP_064815182.1 DNA-entry nuclease inhibitor Regulator
  EFK13_RS02135 (EFK13_02135) nucA/comI 399323..399772 (-) 450 WP_129506749.1 DNA-entry nuclease Machinery gene
  EFK13_RS02140 (EFK13_02140) tlpC 399947..401671 (-) 1725 WP_129506748.1 methyl-accepting chemotaxis protein TlpC -
  EFK13_RS02145 (EFK13_02145) hxlB 401783..402340 (-) 558 WP_129506747.1 6-phospho-3-hexuloisomerase -
  EFK13_RS02150 (EFK13_02150) hxlA 402346..402978 (-) 633 WP_075750199.1 3-hexulose-6-phosphate synthase -
  EFK13_RS02155 (EFK13_02155) hxlR 403210..403572 (+) 363 WP_129506746.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14894.85 Da        Isoelectric Point: 4.5935

>NTDB_id=684844 EFK13_RS02130 WP_064815182.1 398898..399296(-) (nin/comJ) [Bacillus cabrialesii strain TE3]
MIKSWKPQELSISYHQFTVFQKDSAPPVMDWTDEAIEKGYAAADGAISFEAQRNAKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIEIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=684844 EFK13_RS02130 WP_064815182.1 398898..399296(-) (nin/comJ) [Bacillus cabrialesii strain TE3]
TTGATCAAGTCATGGAAGCCGCAAGAACTGTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCCGCACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCCGACGGAGCGATTTCGTTTGAAGCACAGAGAA
ATGCAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACTGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTGAAATTGAAAGCATTATGTCTAAAAGACTTTCCTTTGATCTTCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATCTTCACGCAGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

96.97

100

0.97