Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EFK13_RS00250 Genome accession   NZ_CP096889
Coordinates   45745..46035 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus cabrialesii strain TE3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40745..51035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS00210 (EFK13_00210) darA 40768..41097 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  EFK13_RS00215 (EFK13_00215) - 41110..41550 (+) 441 WP_129506976.1 YaaR family protein -
  EFK13_RS00220 (EFK13_00220) holB 41562..42551 (+) 990 WP_129506975.1 DNA polymerase III subunit delta' -
  EFK13_RS00225 (EFK13_00225) ricT 42554..43381 (+) 828 WP_064814097.1 competence/sporulation regulator complex protein RicT -
  EFK13_RS00230 (EFK13_00230) yabA 43396..43755 (+) 360 WP_129506974.1 replication initiation-control protein YabA -
  EFK13_RS00235 (EFK13_00235) - 43814..44557 (+) 744 WP_129506973.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EFK13_RS00240 (EFK13_00240) - 44544..44843 (+) 300 WP_075747711.1 GIY-YIG nuclease family protein -
  EFK13_RS00245 (EFK13_00245) rsmI 44818..45696 (+) 879 WP_129506972.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EFK13_RS00250 (EFK13_00250) abrB 45745..46035 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  EFK13_RS00255 (EFK13_00255) metG 46530..48524 (+) 1995 WP_129506983.1 methionine--tRNA ligase -
  EFK13_RS00260 (EFK13_00260) - 48603..49370 (+) 768 WP_129506971.1 TatD family hydrolase -
  EFK13_RS00265 (EFK13_00265) - 49526..50839 (+) 1314 WP_129506970.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=684840 EFK13_RS00250 WP_003226760.1 45745..46035(-) (abrB) [Bacillus cabrialesii strain TE3]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=684840 EFK13_RS00250 WP_003226760.1 45745..46035(-) (abrB) [Bacillus cabrialesii strain TE3]
ATGTTTATGAAATCTACTGGTATTGTGCGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1