Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EFK13_RS00020 Genome accession   NZ_CP096889
Coordinates   3027..4139 (+) Length   370 a.a.
NCBI ID   WP_129506996.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS00005 (EFK13_00005) dnaA 1..1341 (+) 1341 WP_129506998.1 chromosomal replication initiator protein DnaA -
  EFK13_RS00010 (EFK13_00010) dnaN 1528..2664 (+) 1137 WP_129506997.1 DNA polymerase III subunit beta -
  EFK13_RS00015 (EFK13_00015) rlbA 2796..3011 (+) 216 WP_003236655.1 ribosome maturation protein RlbA -
  EFK13_RS00020 (EFK13_00020) recF 3027..4139 (+) 1113 WP_129506996.1 DNA replication/repair protein RecF Machinery gene
  EFK13_RS00025 (EFK13_00025) remB 4157..4402 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  EFK13_RS00030 (EFK13_00030) gyrB 4457..6373 (+) 1917 WP_129507261.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EFK13_RS00035 (EFK13_00035) gyrA 6584..9061 (+) 2478 WP_129506995.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42345.39 Da        Isoelectric Point: 7.6855

>NTDB_id=684838 EFK13_RS00020 WP_129506996.1 3027..4139(+) (recF) [Bacillus cabrialesii strain TE3]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPKDLSKI
GDSYQEAFSKLREKEIDRGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=684838 EFK13_RS00020 WP_129506996.1 3027..4139(+) (recF) [Bacillus cabrialesii strain TE3]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCCGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCCCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAACGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTAGA
GGTTGCGGCAAAAGTCGTCGTAAAGCGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCTATCCATGCGGGCA
TCTCAAGAGGGCTAGAAGAGCTGACCCTGAAGTACCATACAGCTCTTGAGGTATCAGATCCTAAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGATCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACAGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTAATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.919

100

0.989