Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M1J35_RS17085 Genome accession   NZ_CP096886
Coordinates   3335700..3337409 (-) Length   569 a.a.
NCBI ID   WP_254651806.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3330700..3342409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS17065 (M1J35_17065) - 3331620..3331859 (+) 240 WP_034758056.1 DUF2627 domain-containing protein -
  M1J35_RS17070 (M1J35_17070) - 3331873..3332607 (-) 735 WP_254651805.1 glycerophosphodiester phosphodiesterase -
  M1J35_RS22730 - 3332804..3332929 (-) 126 WP_256503906.1 hypothetical protein -
  M1J35_RS17075 (M1J35_17075) spo0A 3333201..3333980 (-) 780 WP_034758050.1 sporulation transcription factor Spo0A -
  M1J35_RS17080 (M1J35_17080) spoIVB 3334284..3335573 (-) 1290 WP_034758047.1 SpoIVB peptidase -
  M1J35_RS17085 (M1J35_17085) recN 3335700..3337409 (-) 1710 WP_254651806.1 DNA repair protein RecN Machinery gene
  M1J35_RS17090 (M1J35_17090) ahrC 3337520..3337969 (-) 450 WP_034760580.1 transcriptional regulator AhrC/ArgR -
  M1J35_RS17095 (M1J35_17095) - 3338534..3339370 (-) 837 WP_224521057.1 TlyA family RNA methyltransferase -
  M1J35_RS17100 (M1J35_17100) dxs 3339373..3341265 (-) 1893 WP_254651807.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M1J35_RS17105 (M1J35_17105) - 3341287..3341919 (-) 633 WP_034758036.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64055.02 Da        Isoelectric Point: 5.2687

>NTDB_id=684825 M1J35_RS17085 WP_254651806.1 3335700..3337409(-) (recN) [Rossellomorea sp. KS-H15a]
MLQELSIKNFAIIDSLSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCFQK
AADFGIEIEEGMIVLRRDISSTGKSVCRINGKLVTIAIMREVGASLIDIHGQHEHQELMNESLHLSLLDQFGGKDIASGL
SSYGQVYKEYLSIYKQLNRLNDNEQEMAHRLDLIQFQLKEIQDANLQLKEDEELQEEKRKLMNFEKLFEALQTSYDSIQG
ERKGMDWAGLAMSHLETAAEVDSQYAKTLESVSNAYYILEDAAHQVRGGLDMLEFEPNRLDLIEARLNEINGLKRKYGSS
VEEILAYSSKIEEEIETIMNKDSHVEQLQSKLHSLEKDLSLEAKNLSDTRKMWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGENESFSFHDFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQ
AIAEKIYQVAVHSQVMCISHLPQVAAMADCHLFISKKMSGGRTSTMVKRLQEKDKIREISRMISGVEITDLTLEHAKELL
QLAGSIKET

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=684825 M1J35_RS17085 WP_254651806.1 3335700..3337409(-) (recN) [Rossellomorea sp. KS-H15a]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATTATCGATTCCCTTTCCCTTTCGTTTGAAGAAGGATTGACTGTATT
ATCAGGTGAAACGGGTGCGGGTAAGTCGATCATCATCGATGCCATTCATTTACTTGTTGGCGGCAGAGGCTCCTCTGAGT
ATGTACGGCATGGGGAGAAGAAGGCGGAAATTGAAGGGTTATTTATTCTTGATAATGAAACACATCCCTGCTTTCAGAAA
GCGGCAGACTTCGGGATCGAGATCGAGGAAGGTATGATCGTCCTCAGAAGGGATATCTCGAGCACGGGGAAAAGTGTTTG
CAGAATTAATGGGAAGCTGGTGACGATCGCCATCATGAGGGAAGTCGGGGCATCCCTTATTGACATCCACGGGCAGCACG
AACATCAGGAACTCATGAATGAAAGCCTTCATCTTTCCTTATTGGACCAATTCGGAGGGAAGGATATTGCATCCGGTTTA
TCCAGTTATGGACAAGTATACAAAGAGTATCTATCCATCTATAAGCAGCTGAACAGATTGAATGATAATGAACAGGAGAT
GGCTCATCGCTTGGATCTGATTCAATTTCAGCTGAAAGAGATCCAAGATGCGAATCTTCAGCTTAAAGAAGATGAAGAGT
TGCAGGAAGAGAAGCGGAAACTGATGAACTTTGAAAAGCTATTCGAAGCGCTTCAAACCTCGTATGACAGCATACAAGGT
GAAAGAAAGGGGATGGACTGGGCAGGACTCGCCATGAGCCATCTTGAAACCGCTGCAGAAGTCGATTCTCAGTATGCAAA
GACGCTTGAATCCGTATCGAATGCGTATTATATCCTTGAAGATGCTGCCCATCAAGTCAGGGGTGGATTGGATATGCTTG
AATTCGAGCCGAATCGACTGGACCTGATTGAGGCAAGATTGAATGAAATCAATGGTCTTAAGAGAAAATATGGATCATCG
GTAGAAGAGATTCTTGCCTATAGTTCTAAGATCGAAGAAGAAATCGAAACGATTATGAATAAGGATTCCCATGTTGAACA
ATTACAAAGTAAATTACATTCACTTGAAAAAGATCTATCCCTGGAGGCGAAAAACCTATCCGATACTAGAAAAATGTGGG
CGAAGAAATTGACCGCCAGTATCCACGAACAGTTAAAGCAGCTGTATATGGATAAGACGAAATTCGAAGTCAGGTTTGTG
AAAAGCGGGGAAAACGAATCCTTTTCGTTTCATGATTTTAAGAAGGATGGTTGGGATACGGTTGAGTTTTATATTTCCAC
CAATCCAGGAGAGCCGTTGAAGCCGTTATCGAAGGTGGCTTCAGGTGGGGAACTGTCACGGATCATGCTTGCCCTTAAAA
CCATTTTTTCAAAGCATCAAGGGATTACATCGATCATTTTTGATGAGGTTGATACAGGTGTGAGCGGCAGGGTCGCCCAG
GCCATTGCTGAAAAGATCTACCAGGTTGCCGTCCATTCACAAGTGATGTGCATCTCTCACTTGCCTCAGGTGGCAGCCAT
GGCCGATTGTCACTTGTTCATTTCGAAAAAAATGTCAGGAGGCAGGACGAGCACCATGGTGAAGCGTCTTCAGGAAAAAG
ATAAGATCAGGGAAATTTCACGTATGATTTCAGGAGTGGAAATAACCGATCTGACGCTTGAGCATGCAAAGGAATTACTG
CAACTGGCCGGTTCCATTAAAGAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.375

100

0.601