Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M1J35_RS03300 Genome accession   NZ_CP096886
Coordinates   673857..675233 (+) Length   458 a.a.
NCBI ID   WP_034766026.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668857..680233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS03285 (M1J35_03285) - 669324..669872 (+) 549 WP_224522363.1 UvrB/UvrC motif-containing protein -
  M1J35_RS03290 (M1J35_03290) - 669869..670951 (+) 1083 WP_079534447.1 protein arginine kinase -
  M1J35_RS03295 (M1J35_03295) clpC 670953..673400 (+) 2448 WP_254652759.1 ATP-dependent protease ATP-binding subunit ClpC -
  M1J35_RS03300 (M1J35_03300) radA 673857..675233 (+) 1377 WP_034766026.1 DNA repair protein RadA Machinery gene
  M1J35_RS03305 (M1J35_03305) disA 675237..676310 (+) 1074 WP_034766024.1 DNA integrity scanning diadenylate cyclase DisA -
  M1J35_RS03310 (M1J35_03310) - 676524..677615 (+) 1092 WP_060674161.1 PIN/TRAM domain-containing protein -
  M1J35_RS03315 (M1J35_03315) ispD 677696..678400 (+) 705 WP_254652760.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  M1J35_RS03320 (M1J35_03320) ispF 678393..678869 (+) 477 WP_229597117.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50049.54 Da        Isoelectric Point: 7.0062

>NTDB_id=684802 M1J35_RS03300 WP_034766026.1 673857..675233(+) (radA) [Rossellomorea sp. KS-H15a]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVEMTGKKPRTSFMHSENTGPSKAEKLISIETKQEPRVLTESKEL
NRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSAQLADQKQKVLYISGEESIKQTKLRADRLHVKSDDLYIFAETNLELIH
QTIEQISPDFVIIDSIQTVFHPDVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALVTPTSF
NNPRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDRASSAHDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVIIPQNNLSGWQPPSDIEVKGVSNINEALSIILGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=684802 M1J35_RS03300 WP_034766026.1 673857..675233(+) (radA) [Rossellomorea sp. KS-H15a]
TTGGCAAAGAAAAAGACTAAGTTTGTGTGTTCATCTTGTGGATATGAGTCTGCTAAATGGATGGGGAAATGTCCGGGGTG
TAACGAGTGGAATACGATGGTGGAAGAGGTTGAAATGACAGGGAAGAAACCCCGGACGTCGTTTATGCACTCAGAAAATA
CCGGTCCATCTAAAGCAGAGAAGCTGATCTCCATTGAAACCAAGCAGGAGCCAAGGGTATTGACCGAGTCGAAAGAGTTG
AACCGGGTGCTTGGGGGAGGAGTAGTACCAGGGTCGCTGATATTGATTGGTGGAGACCCGGGGATCGGAAAATCCACTTT
GTTGTTGCAGGTTTCGGCCCAGCTTGCTGATCAGAAGCAGAAGGTATTATACATTTCCGGAGAGGAATCCATCAAGCAAA
CCAAGCTGCGGGCAGATCGACTGCATGTGAAATCAGATGATTTATATATATTTGCGGAAACAAATCTTGAGCTGATTCAT
CAAACGATTGAGCAAATCTCACCGGATTTCGTCATCATCGACTCGATTCAGACAGTCTTTCATCCTGATGTGACGTCTGC
TCCCGGAAGCGTATCCCAGGTAAGGGAGTGTACGGCAGAACTGATGAGAATCGGGAAAACAAAGGGCATTGCCATCTTTA
TTGTAGGGCATGTTACCAAGGAAGGCTCGATTGCAGGACCTAGATTATTGGAGCATATGGTCGATACCGTACTGTATTTT
GAAGGGGAACGTCACCACTCCTATCGTATTTTAAGAGCGGTGAAGAACCGTTTCGGATCTACGAATGAGATGGGGATTTT
TGAAATGAAGGAATTGGGCCTTGAGGAAGTGGCCAATCCGTCTGAGATATTCCTGGAAGAGCGCTCACAAGGTGCGGCGG
GTTCAACGGTCGTTGCCTCGATGGAAGGAACGAGGCCGGTTCTTGTGGAGATTCAAGCTCTTGTGACCCCAACCAGTTTT
AACAACCCCCGAAGGATGGCAACAGGGATTGATCATAGCCGGGTTTCACTGATCATGGCTGTGTTGGAAAAGCGTGCAGG
CATGCTCTTGCAACAGCAAGATGCGTATCTGAAAGTGGCTGGCGGGGTGAAACTGGATGAACCGGCGATTGATTTGGCCG
TTGCTGCAAGTATCGCTTCCAGTTTTCGTGACAGAGCGTCCAGTGCCCATGATTGCATTATCGGTGAAGTCGGTTTAACA
GGTGAGATCAGAAGGGTATCAAGAATTGAGCAGCGCGTACAGGAAGCAGCCAAGTTAGGGTTTAAGAGAGTGATTATTCC
CCAGAATAACTTAAGCGGATGGCAGCCTCCTTCTGATATAGAGGTCAAAGGGGTATCGAATATTAATGAAGCACTGTCAA
TTATTTTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.753

100

0.742
  radA Streptococcus mitis NCTC 12261

63.717

98.69

0.629
  radA Streptococcus mitis SK321

63.717

98.69

0.629
  radA Streptococcus pneumoniae Rx1

63.496

98.69

0.627
  radA Streptococcus pneumoniae D39

63.496

98.69

0.627
  radA Streptococcus pneumoniae R6

63.496

98.69

0.627
  radA Streptococcus pneumoniae TIGR4

63.496

98.69

0.627