Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OM089_RS07270 Genome accession   NZ_CP110368
Coordinates   1545509..1546513 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain 18083286     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540509..1551513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS07240 fghA 1540601..1541452 (+) 852 WP_003163269.1 S-formylglutathione hydrolase -
  OM089_RS07245 ispF 1541523..1541996 (+) 474 WP_003092346.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OM089_RS07250 truD 1541993..1543060 (+) 1068 WP_003163270.1 tRNA pseudouridine(13) synthase TruD -
  OM089_RS07255 surE 1543048..1543797 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  OM089_RS07260 - 1543830..1544465 (+) 636 WP_078451413.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OM089_RS07265 - 1544511..1545404 (+) 894 WP_031639387.1 peptidoglycan DD-metalloendopeptidase family protein -
  OM089_RS07270 rpoS 1545509..1546513 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  OM089_RS07275 fdxA 1546940..1547263 (-) 324 WP_003092272.1 ferredoxin FdxA -
  OM089_RS07280 mutS 1547330..1549897 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  OM089_RS07285 - 1550023..1551030 (-) 1008 WP_003163274.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=684802 OM089_RS07270 WP_003113871.1 1545509..1546513(+) (rpoS) [Pseudomonas aeruginosa strain 18083286]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=684802 OM089_RS07270 WP_003113871.1 1545509..1546513(+) (rpoS) [Pseudomonas aeruginosa strain 18083286]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653