Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OM089_RS02240 Genome accession   NZ_CP110368
Coordinates   479702..480067 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 18083286     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474702..485067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS02210 pyrR 475324..475836 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OM089_RS02215 ruvX 475948..476382 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  OM089_RS02220 - 476382..476951 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  OM089_RS02225 - 477000..477893 (-) 894 WP_003162015.1 energy transducer TonB -
  OM089_RS02230 gshB 478040..478993 (-) 954 WP_003162014.1 glutathione synthase -
  OM089_RS02235 pilG 479248..479655 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  OM089_RS02240 pilH 479702..480067 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  OM089_RS02245 - 480118..480654 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  OM089_RS02250 pilJ 480739..482787 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  OM089_RS02255 pilK 482848..483723 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=684791 OM089_RS02240 WP_003084587.1 479702..480067(+) (pilH) [Pseudomonas aeruginosa strain 18083286]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=684791 OM089_RS02240 WP_003084587.1 479702..480067(+) (pilH) [Pseudomonas aeruginosa strain 18083286]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364