Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M1I95_RS22095 Genome accession   NZ_CP096885
Coordinates   4309723..4311093 (-) Length   456 a.a.
NCBI ID   WP_318548639.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4304723..4316093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS22075 (M1I95_22080) ispF 4306135..4306611 (-) 477 WP_053429964.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  M1I95_RS22080 (M1I95_22085) ispD 4306604..4307302 (-) 699 WP_318548638.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  M1I95_RS22085 (M1I95_22090) - 4307370..4308458 (-) 1089 WP_053429966.1 PIN/TRAM domain-containing protein -
  M1I95_RS22090 (M1I95_22095) disA 4308645..4309718 (-) 1074 WP_048007585.1 DNA integrity scanning diadenylate cyclase DisA -
  M1I95_RS22095 (M1I95_22100) radA 4309723..4311093 (-) 1371 WP_318548639.1 DNA repair protein RadA Machinery gene
  M1I95_RS22100 (M1I95_22105) clpC 4311218..4313662 (-) 2445 WP_053429967.1 ATP-dependent protease ATP-binding subunit ClpC -
  M1I95_RS22105 (M1I95_22110) - 4313659..4314744 (-) 1086 WP_079513655.1 protein arginine kinase -
  M1I95_RS22110 (M1I95_22115) - 4314741..4315283 (-) 543 WP_053429969.1 UvrB/UvrC motif-containing protein -
  M1I95_RS22115 (M1I95_22120) - 4315304..4315765 (-) 462 WP_053429970.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49554.87 Da        Isoelectric Point: 6.7651

>NTDB_id=684783 M1I95_RS22095 WP_318548639.1 4309723..4311093(-) (radA) [Rossellomorea marisflavi strain B3]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVAITGKQPRGAFQHSEGPSKAEKLTSIETMQEPRVLTDSKELNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLAEQKQKILYISGEESIKQTKLRADRLNITADDLYIYAETNLQSIHQT
IDQLSPDFVIIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEG
ERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGSAGSTVVASMEGTRPVLVEIQALVTPTSFNN
PRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDKASRAQDCIIGEVGLTGE
IRRVSRIEQRVQEAAKLGFQRVIIPQNNIGGWQAPGGIEVVGVSDIHQALGMILGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=684783 M1I95_RS22095 WP_318548639.1 4309723..4311093(-) (radA) [Rossellomorea marisflavi strain B3]
TTGGCAAAAAAGAAGACAAAATTCGTATGTTCATCCTGCGGGTATGAATCGGCAAAATGGATGGGGAAATGTCCCGGATG
CAATGAGTGGAACACGATGGTGGAAGAAGTGGCCATTACGGGGAAGCAGCCCCGTGGTGCATTCCAACACAGCGAAGGGC
CGTCGAAGGCTGAAAAGCTGACATCCATCGAGACGATGCAAGAACCCCGTGTCCTTACTGATTCCAAAGAACTCAACCGG
GTACTTGGAGGCGGAGTGGTGCCGGGATCGCTTGTGTTGATAGGGGGAGACCCGGGGATAGGGAAATCCACCCTGCTACT
GCAAGTATCTTCACAGCTTGCTGAACAAAAGCAAAAAATCCTTTATATATCAGGTGAAGAGTCCATCAAGCAGACCAAAC
TGCGTGCGGACCGGCTGAATATCACAGCTGATGACCTATACATATATGCAGAAACCAACCTGCAGTCGATCCACCAGACC
ATCGATCAGCTATCACCCGACTTTGTCATCATCGACTCCATTCAAACCATCTATCATCCGGAGGTCACTTCGGCACCCGG
GAGCGTATCACAGGTGCGGGAATGTACGGCTGAATTGATGCGGATCGGTAAGACGAAGGGAATTGCCATTTTCATTGTCG
GACATGTAACCAAGGAAGGATCCATCGCCGGTCCCCGCCTGCTCGAGCATATGGTGGATACCGTCCTCTATTTTGAAGGG
GAGCGGCACCATTCCTACAGGATCTTGAGAGCGGTGAAGAACCGTTTCGGTTCTACGAATGAGATGGGGATCTTCGAAAT
GAAGGAACTGGGTCTTGAAGAAGTCGCCAATCCTTCGGAGATCTTCCTCGAAGAACGTTCACAGGGATCTGCCGGGTCGA
CGGTCGTTGCATCCATGGAAGGAACAAGGCCGGTGCTTGTGGAAATCCAAGCCCTCGTCACACCGACGAGCTTCAATAAC
CCTAGACGTATGGCAACGGGAATCGACCATAGCAGGGTCTCCCTCATCATGGCAGTGCTGGAGAAGCGGGCGGGGATGCT
CCTTCAGCAACAGGATGCCTACCTCAAGGTCGCAGGCGGAGTGAAGCTAGATGAGCCGGCTATCGATTTGGCCGTGGCGG
CGAGCATTGCTTCAAGCTTCCGGGACAAAGCCTCACGCGCACAGGATTGCATCATCGGGGAAGTGGGACTCACCGGGGAG
ATCCGACGCGTTTCACGGATCGAGCAGAGGGTGCAGGAAGCGGCGAAGCTCGGCTTCCAGCGGGTCATCATCCCGCAGAA
CAATATCGGGGGATGGCAGGCACCGGGCGGCATCGAAGTGGTCGGTGTATCCGATATCCATCAAGCGTTGGGTATGATTT
TAGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.043

100

0.737
  radA Streptococcus mitis NCTC 12261

61.505

100

0.627
  radA Streptococcus pneumoniae Rx1

61.505

100

0.627
  radA Streptococcus pneumoniae D39

61.505

100

0.627
  radA Streptococcus pneumoniae R6

61.505

100

0.627
  radA Streptococcus pneumoniae TIGR4

61.505

100

0.627
  radA Streptococcus mitis SK321

61.505

100

0.627