Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   M1I95_RS19435 Genome accession   NZ_CP096885
Coordinates   3782065..3783015 (-) Length   316 a.a.
NCBI ID   WP_318550340.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3777065..3788015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS19415 (M1I95_19415) - 3777914..3779008 (-) 1095 WP_053428731.1 carbohydrate kinase -
  M1I95_RS19420 (M1I95_19420) - 3779399..3780334 (-) 936 WP_318548357.1 siderophore ABC transporter substrate-binding protein -
  M1I95_RS19425 (M1I95_19425) - 3780364..3781125 (-) 762 WP_318548358.1 ABC transporter ATP-binding protein -
  M1I95_RS19430 (M1I95_19430) - 3781122..3782072 (-) 951 WP_318548359.1 iron chelate uptake ABC transporter family permease subunit -
  M1I95_RS19435 (M1I95_19435) ceuB 3782065..3783015 (-) 951 WP_318550340.1 ABC transporter permease Machinery gene
  M1I95_RS19440 (M1I95_19440) - 3783902..3785293 (-) 1392 WP_318548360.1 alanine/glycine:cation symporter family protein -
  M1I95_RS19445 (M1I95_19445) - 3785421..3785597 (-) 177 WP_318548361.1 hypothetical protein -
  M1I95_RS19450 (M1I95_19450) motB 3786023..3786814 (-) 792 WP_317950641.1 flagellar motor protein MotB -
  M1I95_RS19455 (M1I95_19455) motA 3786801..3787592 (-) 792 WP_053428739.1 flagellar motor stator protein MotA -
  M1I95_RS19460 (M1I95_19460) - 3787745..3787930 (+) 186 WP_048012239.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34704.95 Da        Isoelectric Point: 10.0592

>NTDB_id=684781 M1I95_RS19435 WP_318550340.1 3782065..3783015(-) (ceuB) [Rossellomorea marisflavi strain B3]
MKKRYLLIFLILLSALSLFVGVSSISPADLLSGRTDEVEVFLVSRLPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTMDATRLGILVSMIIFVEASTMEKLLVAFAFAMAGTFLFMQILDRIKFKDVVFIPLVGLMLGNVLSSVTTFFAYKANLI
QNMSSWLQGDFSLIMKGRYELLYISVPVIILAYLFANRFTVAGMGEEFSKNLGMSYRSIVNIGLILTSLVTVTVILTVGM
IPFLGLIVPNIVSLFKGDHLQRTLPHTAILGAIFLLVCDILGRVIIFPYEISISLMVGVIGSAIFLYMLLRRKGYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=684781 M1I95_RS19435 WP_318550340.1 3782065..3783015(-) (ceuB) [Rossellomorea marisflavi strain B3]
CTGAAAAAAAGATATTTATTGATTTTCTTGATCCTCCTCTCGGCCCTTTCTTTATTCGTCGGGGTGAGCAGCATTTCGCC
GGCGGATTTACTCAGCGGAAGGACGGATGAGGTGGAAGTGTTCCTGGTCAGCAGGCTGCCGCGGCTTGTGGCGATCCTAC
TGGCAGGAGCGGGGATGAGCATTGCCGGCCTCATCATGCAGAGCCTGAGCCGGAATAAGTTTGTGTCTCCGACTACGGCA
GGGACAATGGATGCGACGAGGCTCGGAATCCTTGTATCGATGATCATTTTCGTCGAGGCATCCACGATGGAAAAACTTCT
TGTGGCGTTTGCCTTTGCCATGGCGGGTACATTCCTGTTCATGCAGATCCTCGACCGGATCAAGTTCAAGGATGTTGTCT
TCATTCCCTTGGTGGGGCTGATGCTCGGGAATGTCCTGTCGTCTGTCACGACTTTTTTTGCCTACAAGGCGAATTTGATC
CAAAATATGTCCTCTTGGTTGCAGGGAGATTTTTCCCTCATCATGAAGGGAAGATACGAGCTTTTATACATAAGTGTACC
GGTCATCATACTTGCCTATCTCTTCGCCAATCGCTTTACGGTTGCGGGGATGGGGGAGGAGTTTTCGAAGAATCTGGGGA
TGTCCTACAGGAGCATCGTGAACATCGGGTTGATCCTTACATCACTCGTGACGGTAACCGTGATTTTGACCGTGGGGATG
ATTCCCTTCCTCGGGCTCATCGTCCCGAATATCGTGTCCCTTTTCAAAGGGGATCACCTTCAGAGGACGCTGCCGCATAC
GGCCATCCTGGGAGCGATCTTTCTTCTGGTATGCGATATCCTCGGGAGGGTCATCATCTTCCCTTATGAAATCTCCATCA
GCCTGATGGTCGGGGTCATCGGAAGTGCAATCTTCCTCTACATGCTTTTAAGGAGGAAGGGATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513