Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LFL98_RS21040 Genome accession   NZ_CP110365
Coordinates   4041812..4042606 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain HY2-62     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4036812..4047606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS21015 (LFL98_21020) - 4037925..4038608 (-) 684 WP_024573086.1 response regulator transcription factor -
  LFL98_RS21020 (LFL98_21025) - 4038820..4039719 (+) 900 WP_042976941.1 PepSY domain-containing protein -
  LFL98_RS21025 (LFL98_21030) - 4039880..4040380 (+) 501 WP_015250813.1 PepSY domain-containing protein -
  LFL98_RS21030 (LFL98_21035) - 4040377..4040507 (-) 131 Protein_4089 hypothetical protein -
  LFL98_RS21035 (LFL98_21040) htrA 4040528..4041730 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  LFL98_RS21040 (LFL98_21045) vicX 4041812..4042606 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  LFL98_RS21045 (LFL98_21050) walI 4042628..4043470 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  LFL98_RS21050 (LFL98_21055) walH 4043457..4044824 (-) 1368 WP_069323080.1 WalRK two-component regulatory system regulator WalH -
  LFL98_RS21055 (LFL98_21060) walK 4044814..4046649 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  LFL98_RS21060 (LFL98_21065) walR 4046657..4047364 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=684780 LFL98_RS21040 WP_003226939.1 4041812..4042606(-) (vicX) [Bacillus subtilis strain HY2-62]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=684780 LFL98_RS21040 WP_003226939.1 4041812..4042606(-) (vicX) [Bacillus subtilis strain HY2-62]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53