Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LFL98_RS20655 Genome accession   NZ_CP110365
Coordinates   3962285..3962974 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain HY2-62     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3957285..3967974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS20635 (LFL98_20640) yxeA 3958190..3958537 (-) 348 WP_003227084.1 YxeA family protein -
  LFL98_RS20640 (LFL98_20645) yxdM 3958551..3960419 (-) 1869 WP_277736832.1 ABC transporter permease YxdM -
  LFL98_RS20645 (LFL98_20650) yxdL 3960394..3961167 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  LFL98_RS20650 (LFL98_20655) yxdK 3961311..3962288 (-) 978 WP_277736833.1 two-component system sensor histidine kinase YxdK -
  LFL98_RS20655 (LFL98_20660) braR 3962285..3962974 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  LFL98_RS20660 (LFL98_20665) iolJ 3963082..3963954 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  LFL98_RS20665 (LFL98_20670) iolI 3963975..3964811 (-) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  LFL98_RS20670 (LFL98_20675) iolH 3964897..3965766 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  LFL98_RS20675 (LFL98_20680) iolG 3965786..3966820 (-) 1035 WP_032730288.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=684777 LFL98_RS20655 WP_003243527.1 3962285..3962974(-) (braR) [Bacillus subtilis strain HY2-62]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=684777 LFL98_RS20655 WP_003243527.1 3962285..3962974(-) (braR) [Bacillus subtilis strain HY2-62]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAACTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406