Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   M1I95_RS13950 Genome accession   NZ_CP096885
Coordinates   2791286..2792245 (-) Length   319 a.a.
NCBI ID   WP_318550291.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786286..2797245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS13925 (M1I95_13925) - 2786800..2787549 (-) 750 WP_318547461.1 YjbA family protein -
  M1I95_RS13930 (M1I95_13930) - 2787655..2788416 (-) 762 WP_318547462.1 DUF2268 domain-containing protein -
  M1I95_RS13935 (M1I95_13935) fabF 2788522..2789766 (-) 1245 WP_053427547.1 beta-ketoacyl-ACP synthase II -
  M1I95_RS13940 (M1I95_13940) - 2789816..2790748 (-) 933 WP_318547464.1 beta-ketoacyl-ACP synthase III -
  M1I95_RS13945 (M1I95_13945) comZ 2791107..2791289 (-) 183 WP_053427549.1 ComZ family protein Regulator
  M1I95_RS13950 (M1I95_13950) med 2791286..2792245 (-) 960 WP_318550291.1 BMP family ABC transporter substrate-binding protein Regulator
  M1I95_RS13955 (M1I95_13955) - 2792315..2793028 (-) 714 WP_317950506.1 hypothetical protein -
  M1I95_RS13960 (M1I95_13960) - 2793047..2793787 (-) 741 WP_053427552.1 hypothetical protein -
  M1I95_RS13965 (M1I95_13965) - 2794013..2794195 (+) 183 WP_053427553.1 DUF2929 family protein -
  M1I95_RS13970 (M1I95_13970) - 2794252..2795457 (-) 1206 WP_318547465.1 MFS transporter -
  M1I95_RS13975 (M1I95_13975) - 2795684..2796232 (+) 549 WP_318547466.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34904.92 Da        Isoelectric Point: 4.2889

>NTDB_id=684774 M1I95_RS13950 WP_318550291.1 2791286..2792245(-) (med) [Rossellomorea marisflavi strain B3]
MKFFHLSMILLLLGGCTAGSRSGEMDNAGLLVPETIDDGVWGTKGYQGLLGIQKEFDVKVYYKEGMNGDTSVRHALDEFE
KEDVNLVFGHGNEYSSIFNEVASEHENMHLVSFNGDATEKNTTSLTFNGYAMGFFGGMTAASQTKTDRLGVIAAFSWQPE
VQGFIDGARYQNGKAEVLVEYTGHWDHSEVALDRLDGLLDQDVDVVYPAGDGYNVAVIEKLKELGRYAIGYVSDQSDLGE
TTVLTSTVQHADKLYELIAGKYTAGELESGNLEFDFQDGVISMGEFSPVIPAGFKTEMNQHIKAYVDTGKLPNGKEPPL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=684774 M1I95_RS13950 WP_318550291.1 2791286..2792245(-) (med) [Rossellomorea marisflavi strain B3]
ATGAAATTTTTTCACTTGTCGATGATCCTTTTGCTGCTGGGGGGCTGTACTGCCGGTAGCCGGTCAGGAGAGATGGACAA
TGCTGGCCTTTTGGTCCCGGAAACGATTGATGATGGCGTTTGGGGGACAAAAGGGTACCAAGGTCTTTTGGGCATCCAGA
AAGAGTTCGATGTGAAGGTTTACTATAAAGAGGGAATGAATGGAGACACGTCGGTCCGTCATGCCCTGGATGAATTTGAA
AAAGAGGACGTCAATCTTGTGTTCGGTCATGGGAATGAATACTCTTCCATATTCAATGAGGTGGCATCGGAGCATGAGAA
TATGCATCTGGTAAGCTTCAATGGGGACGCTACGGAGAAGAATACTACCAGCTTGACGTTCAACGGGTACGCCATGGGGT
TTTTCGGAGGAATGACTGCTGCATCCCAAACAAAGACGGATCGACTAGGCGTCATTGCCGCCTTTTCCTGGCAACCGGAG
GTCCAGGGCTTCATTGATGGAGCCAGATACCAAAACGGTAAAGCCGAGGTCCTGGTCGAATATACGGGTCACTGGGACCA
CTCGGAGGTCGCACTCGATAGGCTCGACGGGCTTCTCGATCAAGACGTGGACGTTGTATATCCAGCAGGGGACGGGTATA
ATGTGGCTGTAATTGAAAAACTCAAGGAATTAGGTCGCTATGCCATCGGGTATGTGAGCGACCAGTCAGATCTTGGGGAA
ACAACGGTGTTGACGAGTACGGTTCAGCATGCCGACAAGCTGTATGAATTGATTGCCGGGAAATATACTGCCGGTGAACT
TGAGTCTGGTAATCTTGAATTCGATTTCCAGGACGGGGTCATCTCCATGGGAGAATTCAGCCCTGTCATCCCTGCCGGAT
TCAAGACCGAGATGAACCAGCATATCAAAGCGTATGTCGATACCGGAAAACTACCGAACGGAAAGGAGCCGCCATTATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

51.316

95.298

0.489