Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M1I95_RS13855 Genome accession   NZ_CP096885
Coordinates   2769975..2771798 (-) Length   607 a.a.
NCBI ID   WP_318547456.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2764975..2776798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS13820 (M1I95_13820) - 2765559..2766206 (-) 648 WP_048015489.1 GTP pyrophosphokinase family protein -
  M1I95_RS13825 (M1I95_13825) - 2766264..2766635 (-) 372 WP_317948075.1 hypothetical protein -
  M1I95_RS13830 (M1I95_13830) - 2766767..2767366 (+) 600 WP_318547454.1 CYTH domain-containing protein -
  M1I95_RS13835 (M1I95_13835) - 2767426..2768040 (+) 615 WP_318547455.1 lytic transglycosylase domain-containing protein -
  M1I95_RS13840 (M1I95_13840) - 2768203..2768604 (+) 402 WP_053427531.1 globin -
  M1I95_RS13845 (M1I95_13845) - 2768591..2769457 (+) 867 WP_053427835.1 ClpXP adapter SpxH family protein -
  M1I95_RS13850 (M1I95_13850) - 2769741..2769914 (+) 174 WP_317948078.1 hypothetical protein -
  M1I95_RS13855 (M1I95_13855) pepF 2769975..2771798 (-) 1824 WP_318547456.1 oligoendopeptidase F Regulator
  M1I95_RS13860 (M1I95_13860) - 2771892..2773043 (-) 1152 WP_318547457.1 competence protein CoiA -
  M1I95_RS13865 (M1I95_13865) cls 2773132..2774622 (-) 1491 WP_323856352.1 cardiolipin synthase -
  M1I95_RS13870 (M1I95_13870) mecA 2774697..2775368 (-) 672 WP_053427535.1 adaptor protein MecA -
  M1I95_RS13875 (M1I95_13875) spxA 2775723..2776118 (-) 396 WP_048004318.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69888.41 Da        Isoelectric Point: 4.8974

>NTDB_id=684769 M1I95_RS13855 WP_318547456.1 2769975..2771798(-) (pepF) [Rossellomorea marisflavi strain B3]
MSNETAVKRLPTRSEVKQELTWRLEDIFPSDEAWEKEFKEIQELSGKAGDFKGTLGNGADELYAAFAFQDEILERMGKVY
TYSHMRYDQDTTNSHYQGMDDRAKSLYTKLGSAFAYLVPEVLSIEEERIASFLEEKAELKVYAHALEEINLQRPHILTEK
EESLLAQASEVFSSSSNTFGMLNNADLEFPSIKDENGEVTEITHGRFIRFMESSDRAVRKEAFGKVYETYGKFRNTFAST
LSGAVKKDNFSAKVRNYDSARHAALSNNNIPEQVYDNLVETVNSNLHLLQRYVKLRKKVLELDEVHMYDLYTPLVKEVKM
EVGYDEAKKMILDGLKPLGEEYANVLKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRSAQSYTYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHHIHKKAQ
EGVALTSEYLTKEYYELNKKYFGEEIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSHQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTTSSPVEEACKVFEEKLNEMEALLEKLQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=684769 M1I95_RS13855 WP_318547456.1 2769975..2771798(-) (pepF) [Rossellomorea marisflavi strain B3]
ATGTCTAATGAAACAGCTGTAAAACGCCTGCCAACCCGCAGTGAAGTAAAGCAGGAGCTAACGTGGAGGCTTGAAGATAT
CTTCCCGAGTGACGAAGCCTGGGAGAAAGAATTCAAAGAGATCCAGGAGCTTTCAGGCAAGGCAGGGGATTTCAAAGGAA
CACTCGGCAACGGAGCAGATGAACTATATGCCGCTTTTGCTTTCCAGGATGAGATCCTTGAGCGGATGGGGAAGGTTTAT
ACATACTCACATATGCGCTACGACCAGGATACGACCAACTCCCATTATCAGGGGATGGACGACAGAGCGAAGAGTCTTTA
TACAAAACTCGGAAGCGCATTTGCCTATCTGGTTCCGGAGGTCCTTTCCATCGAAGAGGAAAGGATTGCATCATTCCTTG
AAGAAAAAGCTGAACTGAAGGTTTATGCCCATGCCCTTGAAGAGATCAACCTTCAACGTCCCCATATTCTGACTGAGAAG
GAAGAGTCCCTTCTGGCGCAGGCATCAGAGGTGTTCAGTTCATCGAGCAATACATTCGGGATGCTGAATAATGCCGATCT
TGAATTCCCAAGTATCAAAGATGAAAACGGGGAAGTGACGGAAATCACCCACGGACGATTCATCCGTTTCATGGAGAGCA
GTGATCGCGCAGTCAGGAAAGAAGCGTTTGGAAAAGTCTATGAGACATATGGTAAGTTCCGCAATACATTCGCTTCAACT
CTGAGCGGAGCCGTGAAGAAAGATAATTTCTCAGCGAAAGTCCGGAATTATGATTCAGCACGCCATGCGGCCCTTTCAAA
CAATAATATCCCCGAGCAGGTGTATGATAACCTGGTCGAGACCGTCAACAGTAATCTGCATCTCCTTCAGCGATATGTGA
AGCTGCGCAAAAAGGTCCTTGAGCTGGATGAAGTCCATATGTATGACTTGTACACGCCGCTTGTGAAGGAAGTCAAAATG
GAAGTCGGGTATGATGAAGCCAAGAAGATGATCCTTGACGGCCTCAAGCCCCTCGGCGAAGAGTATGCGAATGTCCTGAA
GGAAGGGTTTGAGAACCGCTGGGTGGACGTTGTGGAGAACAAAGGGAAGAGGAGCGGGGCTTATTCATCGGGGGCATATG
GGACGAATCCGTATATCCTTATGAACTGGCAGGATAACGTGAACAATCTGTTCACCCTTGCCCATGAGTTCGGTCACAGT
GTCCATAGTTATTACACAAGGAGCGCCCAATCTTACACGTACGGGAATTATTCCATCTTCGTGGCGGAAGTGGCATCGAC
GTGCAATGAAGCCCTCCTGAATGATTATTTATTGAAAACGATCGACGATGAGAAGAAGCGTCTATATTTGTTGAACCACT
ATCTCGAAGGATTCAGGGGTACGGTATTCCGTCAGACCATGTTCGCCGAGTTTGAACATCATATCCATAAAAAAGCCCAG
GAAGGCGTGGCTCTGACGTCGGAGTACCTGACGAAGGAATATTATGAGCTCAACAAGAAGTACTTCGGAGAGGAAATTGT
CATTGATGAGGAAATCGGACTGGAATGGGCAAGGATTCCTCACTTCTATTACAATTACTACGTCTATCAATATGCAACAG
GCTTCTCGGCTGCGACGGCCCTTAGCCATCAGATCCTCGAAGAAGGCGAGCCTGCTGTCAAACGGTATATCGAGTTCCTG
AAAGCAGGAAGTTCGGATTATCCGATTGAGGTGCTCAAAAAGGCGGGAGTCGATATGACAACCTCCTCACCAGTTGAGGA
AGCATGCAAGGTCTTTGAAGAAAAACTCAACGAGATGGAAGCCCTTCTTGAGAAACTCCAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.41

97.694

0.483