Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LFL98_RS18055 Genome accession   NZ_CP110365
Coordinates   3444905..3445618 (-) Length   237 a.a.
NCBI ID   WP_003228163.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3439905..3450618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS18035 (LFL98_18040) yvcT 3440049..3441026 (+) 978 WP_256683002.1 D-glycerate dehydrogenase -
  LFL98_RS18040 (LFL98_18045) psdB 3441064..3443004 (-) 1941 WP_024571588.1 lantibiotic ABC transporter permease PsdB -
  LFL98_RS18045 (LFL98_18050) psdA 3442979..3443758 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  LFL98_RS18050 (LFL98_18055) psdS 3443841..3444911 (-) 1071 WP_277736717.1 two-component sensor histidine kinase PsdS -
  LFL98_RS18055 (LFL98_18060) braR 3444905..3445618 (-) 714 WP_003228163.1 two-component system response regulator PsdR Regulator
  LFL98_RS18060 (LFL98_18065) - 3445765..3445974 (+) 210 WP_029318346.1 hypothetical protein -
  LFL98_RS18065 (LFL98_18070) yvcN 3446010..3446774 (-) 765 WP_015251150.1 arylamine N-acetyltransferase -
  LFL98_RS18070 (LFL98_18075) crh 3446775..3447032 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  LFL98_RS18075 (LFL98_18080) whiA 3447056..3448006 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  LFL98_RS18080 (LFL98_18085) mgfK 3448029..3448982 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  LFL98_RS18085 (LFL98_18090) rapZ 3448984..3449871 (-) 888 WP_003243903.1 RNase adapter RapZ -
  LFL98_RS18090 (LFL98_18095) yvcI 3449896..3450372 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27541.46 Da        Isoelectric Point: 4.6774

>NTDB_id=684764 LFL98_RS18055 WP_003228163.1 3444905..3445618(-) (braR) [Bacillus subtilis strain HY2-62]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=684764 LFL98_RS18055 WP_003228163.1 3444905..3445618(-) (braR) [Bacillus subtilis strain HY2-62]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTCCTGCTTGATATTA
ACCTTCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCAATTATTTTTATTTCAGCG
CGGACTGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCAAGAATAG
TGGAGCTTGGCGGGCTAACGATTTATCCTGATCAAAATGAAGCGGAGTGGAACAGCGTCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43