Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   M1I95_RS08110 Genome accession   NZ_CP096885
Coordinates   1647618..1648661 (+) Length   347 a.a.
NCBI ID   WP_309516540.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642618..1653661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS08085 (M1I95_08085) - 1642843..1644045 (+) 1203 WP_318549682.1 substrate-binding domain-containing protein -
  M1I95_RS08090 (M1I95_08090) - 1644107..1644880 (+) 774 WP_318549683.1 ABC transporter ATP-binding protein -
  M1I95_RS08095 (M1I95_08095) - 1644858..1645562 (+) 705 WP_159644093.1 ABC transporter ATP-binding protein -
  M1I95_RS08100 (M1I95_08100) - 1645585..1646457 (+) 873 WP_053426590.1 branched-chain amino acid ABC transporter permease -
  M1I95_RS08105 (M1I95_08105) - 1646454..1647449 (+) 996 WP_410528350.1 branched-chain amino acid ABC transporter permease -
  M1I95_RS08110 (M1I95_08110) comGA 1647618..1648661 (+) 1044 WP_309516540.1 competence type IV pilus ATPase ComGA Machinery gene
  M1I95_RS08115 (M1I95_08115) comGB 1648612..1649667 (+) 1056 WP_318549685.1 competence type IV pilus assembly protein ComGB -
  M1I95_RS08120 (M1I95_08120) comGC 1649664..1650008 (+) 345 WP_318549686.1 competence type IV pilus major pilin ComGC -
  M1I95_RS08125 (M1I95_08125) comGD 1650010..1650441 (+) 432 WP_317950153.1 competence type IV pilus minor pilin ComGD -
  M1I95_RS08130 (M1I95_08130) - 1650425..1650742 (+) 318 WP_053426596.1 hypothetical protein -
  M1I95_RS08135 (M1I95_08135) comGF 1650708..1651151 (+) 444 WP_160316477.1 competence type IV pilus minor pilin ComGF -
  M1I95_RS08140 (M1I95_08140) - 1651141..1651497 (+) 357 WP_317950152.1 hypothetical protein -
  M1I95_RS08145 (M1I95_08145) - 1651501..1652001 (+) 501 WP_318549687.1 shikimate kinase -
  M1I95_RS08150 (M1I95_08150) - 1652005..1652232 (+) 228 WP_323856388.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39154.63 Da        Isoelectric Point: 9.3873

>NTDB_id=684760 M1I95_RS08110 WP_309516540.1 1647618..1648661(+) (comGA) [Rossellomorea marisflavi strain B3]
MISEAFRSHATDVHLVPRKNDYLIQFRKLGTLVPFKTIDEDQAERLIAHLKFMSSMDIAEKRKPQSGSYTHFISRIPLAL
RVSTLPTTHLKESLVIRILPERYQIPIEHMSLYPSSAKKLVALLMHSHGLILFTGPTGSGKTTTLYSLVHHCAVSLNRNV
ITLEDPVEKAHDEMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAEIAVRAALTGHLVLSSVHTRDAKGAIY
RLMELGIKWHDIEQTILAVSAQRLLRLKCPVCGNDCFGECLAEGKRTNRATVFEILTGKELKNVLMEAKGEKVDHRYLTL
KQLIRKGVALGYVPESEYRKWIHEEKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=684760 M1I95_RS08110 WP_309516540.1 1647618..1648661(+) (comGA) [Rossellomorea marisflavi strain B3]
ATGATTTCGGAAGCATTTCGCAGTCATGCAACAGATGTCCATCTCGTCCCCCGTAAGAACGATTACCTCATCCAGTTCAG
AAAGCTCGGAACACTCGTCCCCTTCAAGACAATCGACGAAGACCAGGCCGAGCGCCTCATCGCCCATCTGAAGTTCATGT
CCTCCATGGATATCGCAGAGAAGCGAAAGCCCCAAAGCGGCTCCTACACCCATTTCATCTCACGGATCCCCCTGGCACTG
CGGGTATCCACCCTTCCGACCACCCATCTCAAAGAAAGCCTCGTCATCCGGATCCTGCCCGAACGCTATCAAATCCCAAT
CGAGCATATGTCCCTCTATCCGTCATCAGCCAAAAAACTCGTCGCCCTGCTCATGCACTCCCACGGTCTTATTCTATTTA
CTGGACCGACAGGCAGCGGGAAGACGACCACCCTTTACTCCCTTGTCCACCATTGTGCCGTTTCCCTCAACCGCAACGTC
ATCACCTTAGAAGATCCTGTTGAGAAGGCGCACGATGAGATGGTCCAGATTCAAGTGAATGAAAAGGCGGGTATCACGTA
TTCAACCGGTCTTAAAGCGATTCTCCGCCATGATCCCGATATCATCATGGTCGGGGAGATACGGGATAAAGAAACCGCTG
AAATTGCCGTCAGGGCAGCCCTCACCGGACATCTCGTCCTCTCATCTGTCCATACGCGGGATGCGAAGGGTGCCATCTAC
CGGCTCATGGAGCTCGGAATCAAATGGCATGACATTGAACAGACCATTCTGGCGGTTTCTGCCCAAAGGCTGCTGCGATT
GAAATGCCCGGTATGCGGAAATGATTGCTTCGGGGAATGCCTCGCTGAAGGGAAGAGGACCAACCGGGCTACGGTTTTCG
AGATCCTGACGGGCAAAGAACTGAAGAATGTACTAATGGAAGCAAAGGGTGAAAAGGTCGACCATCGATACTTGACGCTG
AAGCAGCTCATCCGGAAGGGGGTGGCCCTCGGATATGTTCCGGAATCTGAGTATCGGAAATGGATACATGAAGAAAAGGG
ATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.755

100

0.548