Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LFL98_RS15155 Genome accession   NZ_CP110365
Coordinates   2905818..2906528 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900818..2911528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS15135 (LFL98_15140) cysK 2900870..2901805 (+) 936 WP_003229237.1 cysteine synthase A -
  LFL98_RS15140 (LFL98_15145) pepV 2901839..2903230 (-) 1392 WP_029318264.1 dipeptidase PepV -
  LFL98_RS15145 (LFL98_15150) pbuO 2903327..2904625 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  LFL98_RS15150 (LFL98_15155) ythQ 2904664..2905821 (-) 1158 WP_277736611.1 ABC transporter permease -
  LFL98_RS15155 (LFL98_15160) pptA 2905818..2906528 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  LFL98_RS15160 (LFL98_15165) ytzE 2906818..2907039 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  LFL98_RS15165 (LFL98_15170) rsuA 2907161..2907880 (-) 720 WP_277736612.1 pseudouridine synthase -
  LFL98_RS15170 (LFL98_15175) murJ 2907949..2909583 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  LFL98_RS15175 (LFL98_15180) ytfP 2909787..2911049 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=684753 LFL98_RS15155 WP_015714539.1 2905818..2906528(-) (pptA) [Bacillus subtilis strain HY2-62]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=684753 LFL98_RS15155 WP_015714539.1 2905818..2906528(-) (pptA) [Bacillus subtilis strain HY2-62]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432