Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M1I95_RS03450 Genome accession   NZ_CP096885
Coordinates   740208..741557 (+) Length   449 a.a.
NCBI ID   WP_323856374.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 735208..746557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS03435 (M1I95_03435) - 735655..737664 (-) 2010 WP_318549116.1 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase -
  M1I95_RS03440 (M1I95_03440) - 737847..738764 (+) 918 WP_318549117.1 DMT family transporter -
  M1I95_RS03445 (M1I95_03445) - 738916..739767 (+) 852 WP_317949867.1 DegV family protein -
  M1I95_RS03450 (M1I95_03450) comFA 740208..741557 (+) 1350 WP_323856374.1 DEAD/DEAH box helicase Machinery gene
  M1I95_RS03455 (M1I95_03455) - 741547..742218 (+) 672 WP_318549118.1 ComF family protein -
  M1I95_RS03460 (M1I95_03460) - 742278..742691 (+) 414 WP_318549119.1 TIGR03826 family flagellar region protein -
  M1I95_RS03465 (M1I95_03465) flgM 742780..743037 (+) 258 WP_159644216.1 flagellar biosynthesis anti-sigma factor FlgM -
  M1I95_RS03470 (M1I95_03470) - 743116..745356 (+) 2241 WP_318549120.1 hypothetical protein -
  M1I95_RS03475 (M1I95_03475) - 745353..745643 (+) 291 WP_318549121.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  M1I95_RS03480 (M1I95_03480) fliS 745688..746137 (+) 450 WP_318549122.1 flagellar export chaperone FliS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50293.14 Da        Isoelectric Point: 8.4340

>NTDB_id=684746 M1I95_RS03450 WP_323856374.1 740208..741557(+) (comFA) [Rossellomorea marisflavi strain B3]
MQLLLCGRALLMDEVLFDGALVHAHYLHGYVSYGPGVKAGICQRCGNGSRDRFGEFECARCGKSCRYCRNCLMMGRVSEC
TPLLTWNGPPPRTKEDVFFAWEGTLSPAQQEASTELVTAVKEDRDLLIWAVCGAGKTEVLFEGIHEALRSGKRVCLATPR
TDVILELSPRLKKVFPETDLITLYGGSEERQSYGQIVLTTTHQLFRFKEAFDVMIVDEVDAFPYSFDSSLQFAVEKARKP
SSSMIHLTATPDAATQRECRSGRRNHFRIPARFHRHPIPSPRFAWCGNWQKSLEKGKIPPPLKKWTLQRLHTSTPALIFF
PSVAIMNKALPLFKAIHPLIESVHAEDPERKEKVMKMRKFEMPILLTTTILERGVTIPGIDVAVLGAEETIFTESALVQI
SGRVGRSSDHPDGDIVYFHHGKTGEMIKARAHISDMNKEAGKRGLIDAT

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=684746 M1I95_RS03450 WP_323856374.1 740208..741557(+) (comFA) [Rossellomorea marisflavi strain B3]
TTGCAATTGCTTCTTTGCGGCAGGGCTTTGTTGATGGATGAGGTCCTGTTCGATGGGGCGCTTGTTCACGCGCATTATCT
ACATGGCTACGTATCATACGGTCCCGGTGTGAAGGCAGGGATTTGTCAGCGCTGCGGGAACGGTTCGCGCGATCGGTTTG
GTGAGTTTGAATGCGCCCGCTGCGGGAAATCATGCCGCTATTGCCGGAACTGTCTGATGATGGGGAGGGTGTCTGAGTGC
ACACCCCTCCTGACGTGGAATGGTCCGCCGCCCCGTACGAAAGAGGATGTCTTCTTTGCCTGGGAAGGGACGCTGTCGCC
TGCGCAACAGGAAGCATCCACCGAGCTCGTTACGGCGGTGAAAGAGGATCGGGACCTGCTGATATGGGCCGTGTGCGGTG
CCGGTAAGACGGAGGTGCTGTTCGAGGGGATCCATGAGGCGCTCAGGAGCGGTAAGCGTGTCTGCCTTGCGACGCCTAGG
ACCGATGTAATCCTGGAGCTTTCCCCGCGTTTGAAGAAGGTGTTTCCTGAGACTGATCTGATCACACTCTACGGTGGTTC
CGAGGAACGCCAGTCATACGGGCAAATCGTGCTGACCACCACACATCAGCTGTTCAGGTTCAAGGAGGCATTCGATGTCA
TGATCGTCGACGAGGTCGATGCATTTCCCTATTCTTTCGATTCATCCCTTCAGTTCGCCGTGGAGAAAGCAAGAAAACCG
TCCTCCTCCATGATCCACCTCACGGCAACGCCCGATGCTGCAACACAGCGGGAGTGCCGATCGGGACGGCGAAACCACTT
CAGAATCCCGGCCCGCTTTCATCGTCACCCCATTCCGTCCCCGCGATTTGCCTGGTGTGGTAACTGGCAGAAATCGTTGG
AAAAAGGAAAGATCCCGCCGCCACTGAAGAAGTGGACACTGCAAAGATTGCATACCTCAACCCCAGCCCTTATCTTTTTC
CCCAGCGTAGCCATCATGAATAAAGCCCTTCCCCTGTTCAAAGCCATTCACCCGCTGATCGAGTCCGTCCATGCCGAGGA
TCCGGAACGAAAAGAAAAGGTCATGAAGATGCGTAAGTTTGAGATGCCCATACTCCTTACCACGACAATCCTCGAGCGGG
GAGTCACCATTCCTGGCATTGATGTGGCGGTCCTCGGGGCAGAAGAAACCATCTTCACCGAGAGTGCGCTTGTCCAGATC
TCGGGCCGGGTGGGGAGGAGTTCCGATCATCCGGACGGGGATATTGTGTATTTTCACCACGGTAAGACCGGCGAGATGAT
TAAAGCCCGTGCCCATATCAGCGACATGAACAAGGAAGCCGGGAAAAGGGGGCTCATCGATGCCACGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-407)

Type III restriction enzyme, res subunit (ResIII)

(105-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.103

99.332

0.488