Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUB18_RS04280 Genome accession   NZ_CP096883
Coordinates   1024691..1026076 (-) Length   461 a.a.
NCBI ID   WP_248755079.1    Uniprot ID   -
Organism   Sphingobacterium sp. PCS056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019691..1031076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB18_RS04265 (MUB18_04265) nagB 1020592..1022511 (-) 1920 WP_045754751.1 glucosamine-6-phosphate deaminase -
  MUB18_RS04270 (MUB18_04270) - 1022653..1023801 (-) 1149 WP_248755078.1 methionine aminotransferase -
  MUB18_RS04275 (MUB18_04275) - 1023939..1024619 (+) 681 WP_045754753.1 peroxiredoxin family protein -
  MUB18_RS04280 (MUB18_04280) radA 1024691..1026076 (-) 1386 WP_248755079.1 DNA repair protein RadA Machinery gene
  MUB18_RS04285 (MUB18_04285) - 1026174..1026674 (+) 501 WP_045754755.1 RNA polymerase sigma factor -
  MUB18_RS04290 (MUB18_04290) - 1026674..1027288 (+) 615 WP_248755080.1 hypothetical protein -
  MUB18_RS04295 (MUB18_04295) - 1027324..1027602 (+) 279 WP_248755081.1 DUF1294 domain-containing protein -
  MUB18_RS04300 (MUB18_04300) - 1027599..1028756 (-) 1158 WP_248755082.1 dipeptidase -
  MUB18_RS04305 (MUB18_04305) - 1028762..1030531 (-) 1770 WP_248755083.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50306.69 Da        Isoelectric Point: 6.7502

>NTDB_id=684719 MUB18_RS04280 WP_248755079.1 1024691..1026076(-) (radA) [Sphingobacterium sp. PCS056]
MAKTKSAYFCQSCGFESAKWLGQCPSCKQWNSLVEEVVEKSGSKVPEWRSTSVTSSPKRANKAAVIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSNANCYILTETSTQ
NIFKQIEVVQPDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVLIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDAPVSGVSIAAMLEGARPMMIEVQALVSN
SAFGNPQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDIAVKTNITFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGVFISKFNTKGLDPKKYNIAIRPVATLEDVFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=684719 MUB18_RS04280 WP_248755079.1 1024691..1026076(-) (radA) [Sphingobacterium sp. PCS056]
ATGGCTAAAACAAAATCAGCATATTTCTGTCAAAGTTGTGGATTTGAATCTGCAAAATGGCTGGGACAATGTCCTTCATG
TAAACAATGGAATTCTTTAGTGGAGGAAGTTGTCGAGAAATCAGGTTCAAAAGTTCCAGAATGGCGGAGTACTTCGGTGA
CATCCTCACCTAAACGCGCAAATAAAGCTGCCGTTATCCACGAGATCGTGTATCAAGATGAATCCCGTATCTTAACACCT
GATCAGGAATTTAACCGTGTGCTTGGAGGAGGGATTGTTCCGGGGTCTTTGGTCTTGATCGGAGGGGAGCCCGGTATCGG
TAAATCGACTTTAATGTTGCAACTCGCGTTATCTATTCCACAGGTGAAGACCTTATATATTTCTGGAGAGGAAAGTGAGC
AACAGATCAAAATGCGGGCGGAACGGTTGTCACAATCATCAAATGCAAATTGCTATATCTTAACGGAAACTTCTACTCAG
AATATCTTTAAACAGATCGAGGTAGTACAGCCCGATGTGATTGTGATCGACTCCATTCAGACGCTACATTCTTCTCAAAT
TGAATCTGCCCCCGGGTCGGTATCTCAAGTGCGAGAATGTACTGCTGAGTTGCTGCGTTTTGCAAAAGAAACAAGTACGC
CTGTTTTGATTGTTGGTCATATTACTAAAGATGGTTCTATCGCAGGTCCCAAAGTATTGGAACATATGGTCGATACGGTA
TTGCAATTTGAAGGTGATCGACATCATGTATACCGGATTTTGCGAGCCGTGAAAAATCGTTTTGGTTCTGCCTCCGAACT
AGGGATATATGAAATGCAAGGATCGGGACTGCGAGAGGTTTCTAATCCTTCTGAAATCATGATTTCGCAACGAGATGCTC
CGGTTAGTGGGGTTTCTATTGCGGCCATGTTAGAGGGGGCACGTCCTATGATGATCGAAGTACAAGCATTGGTCAGTAAT
TCTGCATTTGGAAACCCACAGCGTACCTCTACTGGATTTGATACCAAAAGATTAAGTATGTTGCTTGCTGTACTGGAAAA
GCGCTTTGGCTTTAGGTTGAGCGCGCAAGACGTTTTCTTAAATATTGCTGGCGGATTGCGTGTGGAAGACCCTGCCATAG
ATTTGGCTGTGATCGTTGCTATTATTTCATCACAACAGGATATTGCTGTAAAAACGAATATCACATTTGCGGGAGAAGTG
GGGCTTTCAGGAGAAATTCGTGCCGTAAATCGCATCGAGCAACGCATTGCTGAGGCTGAGAAACTGGGATTTGAAGGTGT
TTTTATATCGAAGTTTAATACCAAAGGATTGGATCCTAAAAAGTATAATATCGCGATTCGACCTGTGGCAACATTAGAAG
ATGTATTTAGAGCCTTGTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.916

100

0.531
  radA Streptococcus pneumoniae Rx1

51.732

100

0.518
  radA Streptococcus pneumoniae R6

51.732

100

0.518
  radA Streptococcus pneumoniae TIGR4

51.732

100

0.518
  radA Streptococcus pneumoniae D39

51.732

100

0.518
  radA Streptococcus mitis NCTC 12261

51.844

100

0.518
  radA Streptococcus mitis SK321

51.627

100

0.516