Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LFL98_RS10565 Genome accession   NZ_CP110365
Coordinates   2085033..2086808 (-) Length   591 a.a.
NCBI ID   WP_163130792.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2080033..2091808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS10545 (LFL98_10550) desE 2080405..2081463 (+) 1059 WP_033884033.1 fatty acid desaturase DesE -
  LFL98_RS10550 (LFL98_10555) desK 2081582..2082694 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  LFL98_RS10555 (LFL98_10560) desR 2082713..2083312 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  LFL98_RS10560 (LFL98_10565) walL 2083922..2084785 (-) 864 WP_003231267.1 3D domain-containing protein -
  LFL98_RS10565 (LFL98_10570) recQ 2085033..2086808 (-) 1776 WP_163130792.1 DNA helicase RecQ Machinery gene
  LFL98_RS10575 (LFL98_10580) azoJ 2087373..2087999 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  LFL98_RS10580 (LFL98_10585) yocK 2088150..2088641 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  LFL98_RS10585 (LFL98_10590) - 2088716..2089048 (-) 333 WP_003231257.1 hypothetical protein -
  LFL98_RS10590 (LFL98_10595) - 2089126..2089353 (+) 228 WP_004399329.1 hypothetical protein -
  LFL98_RS10595 (LFL98_10600) yocM 2089340..2089816 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  LFL98_RS10600 (LFL98_10605) - 2089883..2090146 (+) 264 WP_004399338.1 hypothetical protein -
  LFL98_RS10605 (LFL98_10610) - 2090151..2090384 (+) 234 WP_003231251.1 hypothetical protein -
  LFL98_RS10610 (LFL98_10615) yozO 2090471..2090815 (-) 345 WP_003220141.1 PH domain-containing protein -
  LFL98_RS10615 (LFL98_10620) yozC 2091169..2091372 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67271.71 Da        Isoelectric Point: 6.1768

>NTDB_id=684714 LFL98_RS10565 WP_163130792.1 2085033..2086808(-) (recQ) [Bacillus subtilis strain HY2-62]
MLHRAQSLLAHYFGYEKFRSGQDEAISLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=684714 LFL98_RS10565 WP_163130792.1 2085033..2086808(-) (recQ) [Bacillus subtilis strain HY2-62]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCAG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACCGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGTCGGTATCACGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTACAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGCCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCCGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.662

100

0.997