Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LFL98_RS09105 Genome accession   NZ_CP110365
Coordinates   1741091..1741522 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain HY2-62     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736091..1746522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS09085 (LFL98_09090) spoVS 1736652..1736912 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LFL98_RS09090 (LFL98_09095) tdh 1737178..1738221 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  LFL98_RS09095 (LFL98_09100) kbl 1738234..1739412 (+) 1179 WP_033883739.1 glycine C-acetyltransferase -
  LFL98_RS09100 (LFL98_09105) miaB 1739560..1741089 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LFL98_RS09105 (LFL98_09110) ymcA 1741091..1741522 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  LFL98_RS09110 (LFL98_09115) cotE 1741784..1742329 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  LFL98_RS09115 (LFL98_09120) hexA 1742462..1745038 (+) 2577 WP_259266357.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=684708 LFL98_RS09105 WP_003231834.1 1741091..1741522(+) (ymcA) [Bacillus subtilis strain HY2-62]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=684708 LFL98_RS09105 WP_003231834.1 1741091..1741522(+) (ymcA) [Bacillus subtilis strain HY2-62]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1