Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GsYM18_RS05630 Genome accession   NZ_AP017912
Coordinates   1202302..1203354 (+) Length   350 a.a.
NCBI ID   WP_119332202.1    Uniprot ID   -
Organism   Geobacter sulfurreducens strain YM18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197302..1208354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsYM18_RS05620 (YM18_1111) smc 1198394..1201921 (+) 3528 WP_119332200.1 chromosome segregation protein SMC -
  GsYM18_RS05625 (YM18_1112) - 1201941..1202300 (+) 360 WP_119332201.1 roadblock/LC7 domain-containing protein -
  GsYM18_RS05630 (YM18_1113) pilA 1202302..1203354 (+) 1053 WP_119332202.1 signal recognition particle-docking protein FtsY Machinery gene
  GsYM18_RS05635 (YM18_1114) - 1203416..1203592 (+) 177 WP_010941794.1 cell division protein ZapB -
  GsYM18_RS05640 (YM18_1115) - 1203592..1203879 (+) 288 WP_119332203.1 cell division protein ZapA -
  GsYM18_RS05650 (YM18_1116) - 1204261..1204824 (+) 564 WP_119332204.1 5-formyltetrahydrofolate cyclo-ligase -
  GsYM18_RS05655 (YM18_1117) rny 1204852..1206414 (+) 1563 WP_119332205.1 ribonuclease Y -
  GsYM18_RS05660 (YM18_1118) - 1206404..1207192 (+) 789 WP_119332206.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37923.31 Da        Isoelectric Point: 5.3689

>NTDB_id=68468 GsYM18_RS05630 WP_119332202.1 1202302..1203354(+) (pilA) [Geobacter sulfurreducens strain YM18]
MAEERKGFFKGLWGKVAGGDRDQEEAVNETTSAVADVAAPPEQEDRRPGFFERLKQGLSKTRDSLVGRIDRLVLGKKEID
ADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALREALKEDIHGRLARDAHQLDVTGASPFVIMVIGVNGV
GKTTTIGKLAARFTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTA
GRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAKGGIVVAICNEF
RIPVRYIGVGEGIDDLRDFDPSQFVDALFQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=68468 GsYM18_RS05630 WP_119332202.1 1202302..1203354(+) (pilA) [Geobacter sulfurreducens strain YM18]
ATGGCGGAAGAACGGAAGGGCTTTTTCAAGGGACTTTGGGGTAAGGTTGCCGGCGGCGATCGTGATCAGGAAGAGGCAGT
CAATGAAACGACGTCCGCCGTTGCGGATGTCGCTGCACCGCCGGAACAGGAAGACCGGCGCCCCGGATTTTTCGAGCGGC
TCAAACAGGGGCTGAGCAAGACCCGCGATAGCCTGGTGGGACGCATCGATCGTCTCGTGCTCGGCAAGAAGGAGATTGAC
GCCGACACCCTTGAGGAGCTGGAGGAGATACTCATTACCGCCGATCTTGGCGTCCAGACCACCGTGGAGTTGATCAGGGG
ATTGGAGCAGCGCCTCTCCCGCAACGAGCTCAAGGACGGCGAGGCCCTCCGGGAGGCGCTCAAGGAGGATATCCACGGTC
GCCTTGCCCGTGACGCCCATCAACTGGACGTAACAGGTGCCTCTCCCTTCGTCATCATGGTCATCGGCGTCAACGGTGTC
GGCAAGACTACTACCATCGGCAAGCTCGCGGCCCGGTTTACCGCCCAGGGGAAAAAAGTGATTCTGGCCGCCGGCGACAC
CTTCCGCGCTGCTGCCGCCGAGCAACTCCAGATATGGGGCGAGCGTACCGGCGTCGACGTGATCCGCCACAAGGAAGGGG
CGGATCCGTCTGCCGTTGTGTTCGACAGCATCAAGGCGGCCGTGGCCCGTGGCGCGGACATCCTCATCGTCGACACCGCC
GGCCGTCTCCATACCAAGGTAAACCTCATGGAGGAACTCAAAAAAGTCCGCCGCATCATGTCGCGGGAGATCCCCGGGGC
TCCCCACGAGACGTTGCTGGTTCTTGACGCGGCAACGGGACAGAATGCCCTCTCGCAGGCGAAACTCTTCAAGGAGGCAG
CCCAGGTTACCGGCATCGCCCTGACAAAGCTTGACGGTACGGCAAAGGGAGGAATCGTGGTTGCAATCTGCAATGAGTTC
AGGATTCCCGTCCGTTACATCGGCGTCGGCGAGGGCATCGACGACCTGCGGGATTTCGATCCCTCCCAATTTGTGGACGC
CCTCTTTCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(149-349)

SRP54-type protein, helical bundle domain (SRP54_N)

(66-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.761

93.143

0.491

Multiple sequence alignment