Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LFL98_RS05390 Genome accession   NZ_CP110365
Coordinates   1036540..1037283 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain HY2-62     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031540..1042283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS05355 (LFL98_05360) yhaI 1031868..1032209 (+) 342 WP_009966921.1 YhaI family protein -
  LFL98_RS05360 (LFL98_05365) scoC 1032206..1032817 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  LFL98_RS05365 (LFL98_05370) yhaH 1032996..1033352 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  LFL98_RS05370 (LFL98_05375) - 1033482..1033673 (+) 192 WP_003233238.1 hypothetical protein -
  LFL98_RS05375 (LFL98_05380) trpP 1033747..1034265 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  LFL98_RS05380 (LFL98_05385) serC 1034389..1035468 (-) 1080 WP_192858346.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  LFL98_RS05385 (LFL98_05390) hinT 1035615..1036052 (-) 438 WP_003233231.1 HIT family protein -
  LFL98_RS05390 (LFL98_05395) pptA 1036540..1037283 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  LFL98_RS05395 (LFL98_05400) ecsB 1037276..1038502 (+) 1227 WP_017695369.1 ABC transporter permease EcsB -
  LFL98_RS05400 (LFL98_05405) ecsC 1038522..1039232 (+) 711 WP_038427569.1 EcsC family protein -
  LFL98_RS05405 (LFL98_05410) sndC 1039250..1040440 (-) 1191 WP_080529130.1 N-acetyl amino acid acetylase SndC -
  LFL98_RS05410 (LFL98_05415) - 1040513..1041904 (-) 1392 WP_072692642.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=684670 LFL98_RS05390 WP_003233230.1 1036540..1037283(+) (pptA) [Bacillus subtilis strain HY2-62]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=684670 LFL98_RS05390 WP_003233230.1 1036540..1037283(+) (pptA) [Bacillus subtilis strain HY2-62]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547