Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LFL98_RS02390 Genome accession   NZ_CP110365
Coordinates   466550..466984 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain HY2-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461550..471984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS02360 (LFL98_02360) ydaD 462197..463057 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  LFL98_RS02365 (LFL98_02365) lyxE 463073..463576 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  LFL98_RS02370 (LFL98_02370) ydaF 463664..464215 (+) 552 WP_277736924.1 GNAT family protein -
  LFL98_RS02375 (LFL98_02375) ydaG 464293..464715 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  LFL98_RS02380 (LFL98_02380) amj 465221..466030 (+) 810 WP_032722918.1 lipid II flippase Amj -
  LFL98_RS02385 (LFL98_02385) ydzA 466075..466365 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  LFL98_RS02390 (LFL98_02390) lrpC 466550..466984 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  LFL98_RS02395 (LFL98_02395) topB 467049..469232 (+) 2184 WP_076458431.1 DNA topoisomerase III -
  LFL98_RS02400 (LFL98_02400) epsJ 469435..470523 (+) 1089 WP_076458433.1 lipoprotein YdaJ -
  LFL98_RS02405 (LFL98_02405) epsK 470504..471355 (+) 852 WP_121572534.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=684658 LFL98_RS02390 WP_003246585.1 466550..466984(+) (lrpC) [Bacillus subtilis strain HY2-62]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=684658 LFL98_RS02390 WP_003246585.1 466550..466984(+) (lrpC) [Bacillus subtilis strain HY2-62]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1