Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GsYM18_RS01400 Genome accession   NZ_AP017912
Coordinates   301520..302872 (-) Length   450 a.a.
NCBI ID   WP_119331574.1    Uniprot ID   -
Organism   Geobacter sulfurreducens strain YM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296520..307872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsYM18_RS01380 (YM18_0270) - 296872..298797 (-) 1926 WP_232008949.1 histidine kinase N-terminal 7TM domain-containing protein -
  GsYM18_RS01390 (YM18_0272) - 299238..301040 (-) 1803 WP_119331573.1 ATP-binding protein -
  GsYM18_RS01395 (YM18_0273) dksA 301079..301435 (-) 357 WP_010940956.1 RNA polymerase-binding protein DksA -
  GsYM18_RS01400 (YM18_0274) radA 301520..302872 (-) 1353 WP_119331574.1 DNA repair protein RadA Machinery gene
  GsYM18_RS01405 (YM18_0275) - 303024..304661 (+) 1638 WP_119331575.1 HEAT repeat domain-containing protein -
  GsYM18_RS01410 (YM18_0276) - 304654..306015 (+) 1362 WP_119331576.1 HD-GYP domain-containing protein -
  GsYM18_RS01415 (YM18_0277) - 306025..306606 (-) 582 WP_119331577.1 HEAT repeat domain-containing protein -
  GsYM18_RS01420 (YM18_0278) - 306714..307046 (+) 333 WP_119331578.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47319.59 Da        Isoelectric Point: 6.8930

>NTDB_id=68462 GsYM18_RS01400 WP_119331574.1 301520..302872(-) (radA) [Geobacter sulfurreducens strain YM18]
MKTVTRYACQKCGYQSAKWLGKCPDCAAWNSFVEEVTGGGRKGAASLPAATRPVPICDVASEAETRLSCGISEFDRVLGG
GLVSGSLVLIGGDPGIGKSTILLQVMDHLARTAGSVLYVSGEESARQTKMRGERLGIGARELLVLAETSLELILSQVTAL
APRALVIDSIQTVFSANLESAPGSVSQVRECAGRLMELAKRNGIPTLLVGHVTKDGSLAGPRVLEHMVDTVLYFEGDPGH
AFRILRAVKNRFGSTNEIGVFEMKEGGLSEVRNPSELFLAERPLGVSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRT
TLGVDHNRLALLVAVLDKKVGLHLSGQDIFLNAAGGARLSEPAIDLGMVAALASSHLDKIIDPHTVIVGEVGLAGEVRAI
TQAETRVREAAKLGFTRAVIPAGSVRQVGDVPGMNVVGVKSLDEALEQLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=68462 GsYM18_RS01400 WP_119331574.1 301520..302872(-) (radA) [Geobacter sulfurreducens strain YM18]
GTGAAAACCGTAACCCGTTATGCCTGCCAGAAATGCGGCTACCAATCGGCCAAATGGCTCGGGAAATGCCCCGACTGCGC
CGCCTGGAACAGTTTTGTCGAGGAAGTCACCGGCGGCGGACGAAAAGGTGCCGCCTCCCTGCCCGCAGCCACCCGCCCGG
TCCCCATCTGTGATGTGGCCAGCGAGGCGGAAACACGCCTGTCGTGCGGCATCTCCGAATTCGACCGGGTACTGGGCGGT
GGTCTCGTCTCCGGCTCCCTGGTGCTCATCGGCGGCGACCCCGGCATCGGCAAATCCACCATTCTTTTGCAAGTCATGGA
CCACCTTGCGCGGACCGCGGGATCGGTTCTCTACGTATCGGGAGAGGAATCGGCGCGACAGACAAAAATGCGCGGCGAAC
GCCTGGGCATCGGAGCACGTGAACTGCTCGTCCTCGCCGAGACCTCCCTCGAACTCATCCTGTCCCAAGTTACCGCTCTC
GCCCCCCGGGCCCTTGTGATCGACTCCATCCAGACCGTTTTCAGCGCGAACCTCGAATCGGCGCCCGGCAGCGTCAGCCA
GGTGCGCGAGTGCGCCGGCAGGCTCATGGAGCTGGCCAAGCGCAACGGCATCCCCACCCTCCTTGTGGGACACGTGACCA
AGGACGGCTCCCTGGCGGGCCCACGGGTGCTGGAGCACATGGTCGACACGGTGCTCTACTTCGAAGGGGACCCGGGGCAT
GCCTTCAGGATTCTCAGGGCCGTCAAGAACCGCTTCGGCTCAACCAATGAAATCGGCGTATTCGAGATGAAAGAGGGCGG
CCTCAGCGAAGTGAGAAACCCCTCGGAGCTCTTCCTGGCCGAACGGCCGCTCGGCGTTTCGGGGTCCGCCGTCGTCACCA
CTATCGAGGGGAGCCGACCGCTGCTGGTGGAACTGCAGGCACTGGTCACCCCCTCATCCCTGGGCGTTCCACGCCGCACC
ACTCTCGGGGTTGACCATAACCGCCTCGCGCTCCTGGTGGCCGTGCTCGACAAAAAAGTCGGCCTCCACCTGTCGGGGCA
GGACATCTTCCTGAACGCCGCCGGCGGCGCACGGCTCAGCGAGCCGGCCATCGACCTGGGCATGGTGGCGGCCCTCGCAT
CAAGCCACTTGGACAAAATAATCGATCCCCACACGGTCATTGTCGGCGAGGTGGGCCTTGCGGGGGAAGTCCGCGCCATT
ACCCAGGCGGAAACACGGGTCCGCGAGGCCGCCAAGCTGGGCTTCACGCGGGCGGTTATCCCCGCCGGCAGCGTCCGGCA
GGTCGGCGATGTTCCCGGCATGAACGTCGTGGGAGTGAAATCCCTGGATGAAGCGCTGGAACAGCTCTTCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-448)

AAA domain (AAA_25)

(76-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.444

100

0.564
  radA Streptococcus mitis NCTC 12261

54.484

99.111

0.54
  radA Streptococcus pneumoniae Rx1

54.484

99.111

0.54
  radA Streptococcus pneumoniae D39

54.484

99.111

0.54
  radA Streptococcus pneumoniae R6

54.484

99.111

0.54
  radA Streptococcus pneumoniae TIGR4

54.484

99.111

0.54
  radA Streptococcus mitis SK321

54.484

99.111

0.54

Multiple sequence alignment