Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M0M44_RS04375 Genome accession   NZ_CP096829
Coordinates   947651..949012 (+) Length   453 a.a.
NCBI ID   WP_095930311.1    Uniprot ID   -
Organism   Flavobacterium humidisoli strain MMS21-Er5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 942651..954012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M44_RS04355 (M0M44_04355) - 944167..944973 (-) 807 WP_248728667.1 glycogen/starch synthase -
  M0M44_RS04360 (M0M44_04360) panC 945080..945928 (+) 849 WP_248728668.1 pantoate--beta-alanine ligase -
  M0M44_RS04365 (M0M44_04365) panD 945943..946293 (+) 351 WP_008465481.1 aspartate 1-decarboxylase -
  M0M44_RS04370 (M0M44_04370) - 946497..947651 (+) 1155 WP_248728669.1 alpha/beta hydrolase -
  M0M44_RS04375 (M0M44_04375) radA 947651..949012 (+) 1362 WP_095930311.1 DNA repair protein RadA Machinery gene
  M0M44_RS04380 (M0M44_04380) - 949097..949582 (-) 486 WP_248728670.1 DUF6252 family protein -
  M0M44_RS04385 (M0M44_04385) - 949847..951811 (+) 1965 WP_248728671.1 transglycosylase domain-containing protein -
  M0M44_RS04390 (M0M44_04390) - 952001..953038 (-) 1038 WP_248728672.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49768.16 Da        Isoelectric Point: 6.0975

>NTDB_id=684592 M0M44_RS04375 WP_095930311.1 947651..949012(+) (radA) [Flavobacterium humidisoli strain MMS21-Er5]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPTSKAPKPLKINEIDSTQEVRMDTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
ETIQPEVVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFDTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=684592 M0M44_RS04375 WP_095930311.1 947651..949012(+) (radA) [Flavobacterium humidisoli strain MMS21-Er5]
ATGTCTAAAGTTAAAACTTCCTTTTTCTGCCAAAACTGCGGAACCCAATATGCTAAATGGCAAGGGCAATGCAACGCGTG
CAAAGAATGGAATACGATTGCCGAAGAAATCATTCAAAAACAAGATAAGGTTGCTTGGAAAAGCGAACCTACTCCAACAA
GCAAAGCGCCAAAACCTTTAAAAATTAACGAAATTGATTCTACGCAGGAAGTCCGAATGGACACTACTGATAGCGAATTG
AATCGTGTTTTAGGTGGTGGACTTGTCCCTGGATCTTTGACGCTCTTGGGCGGTGAACCCGGCATCGGAAAAAGTACACT
TTTACTTCAAGTATCATTAAAGTTACCTTATAAAACATTATACGTTTCTGGAGAAGAAAGTCAGAAACAAATAAAAATGC
GTGCCGAAAGAATAACGCCAAATAGCGATAACTGCTATATTTTAACGGAAACCAAAACGCAAAACATCTTTAAACAAATT
GAAACCATTCAGCCTGAAGTGGTCATTATTGACTCGATTCAGACTTTGCATACCGATTATATCGAGTCGACTGCTGGAAG
CATTTCTCAGATTCGAGAAACCACTGCAGAACTGATAAAATTTGCTAAAGAAAGCAATATTCCAGTAATATTGATTGGCC
ATATTACAAAAGACGGGAACATTGCTGGTCCAAAAATTTTGGAGCATATGGTCGATACCGTTTTACAGTTTGAAGGCGAC
AGAAATCATATTTACCGAATTTTACGTTCGCTAAAAAACCGTTTTGGTTCAACATCAGAACTTGGAATTTACGAAATGTT
GGGAAGCGGATTACGAGAAGTAAGCAATCCTTCTGAAATCTTGATTTCTCATAAAGACGAAGAATTATCTGGAACTGCTA
TCGCGACGACTTTAGAAGGTATGCGTCCGTTGATGATCGAAATACAATCTTTAGTGAGTACAGCTGTTTATGGAACACCT
CAACGAAGCACAACAGGTTACAACGCAAAAAGGCTAAACATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGATTCCGTTT
AGGTGCAAAAGACGTTTTCTTGAATGTAACTGGCGGAATTTCGGTTGATGATCCTGCAATCGATTTGGCGGTTGTTGCTG
CGATTTTATCTTCAAACGAAGATATTCCTGTTGGAAAAGGATTCTGTTTTGCTGGTGAAGTGGGGCTTTCTGGCGAAATT
CGCCCTGTGAATCGTGTTGACCAACGCATTCAGGAAGCTGAAAAACTAGGTTTCGACACTATTTTTGTTTCTAAATACAA
CAAAATCGCTTTAAAAAACACTGGAATTAAAATCGAACTGGTTGCTAAAATTGAAGATGTTGCGAGCATTCTTTTTGGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.93

100

0.486
  radA Streptococcus mitis SK321

50.82

94.26

0.479
  radA Streptococcus pneumoniae Rx1

50.82

94.26

0.479
  radA Streptococcus pneumoniae D39

50.82

94.26

0.479
  radA Streptococcus pneumoniae R6

50.82

94.26

0.479
  radA Streptococcus pneumoniae TIGR4

50.82

94.26

0.479
  radA Streptococcus mitis NCTC 12261

50.82

94.26

0.479