Detailed information NTG0684554

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA48_RS07355
• Genome accession: NZ_CP110353
• Coordinates: 1520951..1521955 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA48
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1515951..1526955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA48_RS07325 (PALA48_01452)	fghA	1516043..1516894 (+)	852	WP_012613727.1	S-formylglutathione hydrolase	-
PALA48_RS07330 (PALA48_01453)	ispF	1516965..1517438 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA48_RS07335 (PALA48_01454)	truD	1517435..1518502 (+)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
PALA48_RS07340 (PALA48_01455)	surE	1518490..1519239 (+)	750	WP_012613729.1	5'/3'-nucleotidase SurE	-
PALA48_RS07345 (PALA48_01456)	-	1519272..1519907 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA48_RS07350 (PALA48_01457)	-	1519953..1520846 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA48_RS07355 (PALA48_01458)	rpoS	1520951..1521955 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA48_RS07360 (PALA48_01459)	fdxA	1522382..1522705 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA48_RS07365 (PALA48_01460)	mutS	1522772..1525339 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PALA48_RS07370 (PALA48_01461)	-	1525465..1526472 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684554 PALA48_RS07355 WP_003113871.1 1520951..1521955(+) (rpoS) [Pseudomonas aeruginosa strain PALA48]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684554 PALA48_RS07355 WP_003113871.1 1520951..1521955(+) (rpoS) [Pseudomonas aeruginosa strain PALA48]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653