Detailed information NTG0684453

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA47_RS06665
• Genome accession: NZ_CP110352
• Coordinates: 1429974..1430978 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA47
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1424974..1435978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA47_RS06635 (PALA47_01319)	fghA	1425066..1425917 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
PALA47_RS06640 (PALA47_01320)	ispF	1425988..1426461 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA47_RS06645 (PALA47_01321)	truD	1426458..1427525 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA47_RS06650 (PALA47_01322)	surE	1427513..1428262 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA47_RS06655 (PALA47_01323)	-	1428295..1428930 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA47_RS06660 (PALA47_01324)	-	1428976..1429869 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA47_RS06665 (PALA47_01325)	rpoS	1429974..1430978 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA47_RS06670 (PALA47_01326)	fdxA	1431405..1431728 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA47_RS06675 (PALA47_01327)	mutS	1431795..1434362 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA47_RS06680 (PALA47_01328)	-	1434488..1435495 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684453 PALA47_RS06665 WP_003113871.1 1429974..1430978(+) (rpoS) [Pseudomonas aeruginosa strain PALA47]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684453 PALA47_RS06665 WP_003113871.1 1429974..1430978(+) (rpoS) [Pseudomonas aeruginosa strain PALA47]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653