Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   M2A29_RS16275 Genome accession   NZ_CP096812
Coordinates   3473319..3473645 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 51248     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3468319..3478645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS16255 (M2A29_16255) - 3468434..3469063 (-) 630 WP_284625770.1 FHA domain-containing protein -
  M2A29_RS16260 (M2A29_16260) gspD 3469104..3471365 (-) 2262 WP_272327293.1 type II secretion system secretin GspD -
  M2A29_RS16265 (M2A29_16265) - 3471407..3472243 (-) 837 WP_272327296.1 type II secretion system protein N -
  M2A29_RS16270 (M2A29_16270) gspN 3472243..3472986 (-) 744 WP_000730345.1 type II secretion system protein N -
  M2A29_RS16275 (M2A29_16275) hns 3473319..3473645 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  M2A29_RS16280 (M2A29_16280) - 3473840..3474280 (-) 441 WP_000661569.1 thioesterase family protein -
  M2A29_RS16285 (M2A29_16285) - 3474288..3475481 (-) 1194 WP_272327299.1 heme biosynthesis protein HemY -
  M2A29_RS16290 (M2A29_16290) - 3475491..3476330 (-) 840 WP_272252711.1 hypothetical protein -
  M2A29_RS16295 (M2A29_16295) - 3476339..3477106 (-) 768 WP_031959800.1 uroporphyrinogen-III synthase -
  M2A29_RS16300 (M2A29_16300) hemC 3477111..3478028 (-) 918 WP_031978542.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=684330 M2A29_RS16275 WP_000801427.1 3473319..3473645(-) (hns) [Acinetobacter baumannii strain 51248]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=684330 M2A29_RS16275 WP_000801427.1 3473319..3473645(-) (hns) [Acinetobacter baumannii strain 51248]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAGCTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1