Detailed information NTG0684279

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA44_RS11945
• Genome accession: NZ_CP110350
• Coordinates: 2563096..2564100 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA44
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2558096..2569100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA44_RS11915 (PALA44_02364)	fghA	2558188..2559039 (+)	852	WP_033938392.1	S-formylglutathione hydrolase	-
PALA44_RS11920 (PALA44_02365)	ispF	2559110..2559583 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA44_RS11925 (PALA44_02366)	truD	2559580..2560647 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
PALA44_RS11930 (PALA44_02367)	surE	2560635..2561384 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA44_RS11935 (PALA44_02368)	-	2561417..2562052 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA44_RS11940 (PALA44_02369)	-	2562098..2562991 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA44_RS11945 (PALA44_02370)	rpoS	2563096..2564100 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA44_RS11950 (PALA44_02371)	fdxA	2564527..2564850 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA44_RS11955 (PALA44_02372)	mutS	2564917..2567484 (-)	2568	WP_079976783.1	DNA mismatch repair protein MutS	-
PALA44_RS11960 (PALA44_02373)	-	2567547..2568788 (-)	1242	WP_058151333.1	site-specific integrase	-
PALA44_RS11965	-	2568767..2568952 (-)	186	WP_088169860.1	excisionase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684279 PALA44_RS11945 WP_003113871.1 2563096..2564100(+) (rpoS) [Pseudomonas aeruginosa strain PALA44]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684279 PALA44_RS11945 WP_003113871.1 2563096..2564100(+) (rpoS) [Pseudomonas aeruginosa strain PALA44]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653