Detailed information NTG0684147

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA40_RS07805
• Genome accession: NZ_CP110349
• Coordinates: 1650848..1651852 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA40
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1645848..1656852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA40_RS07775 (PALA40_01539)	fghA	1645940..1646791 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA40_RS07780 (PALA40_01540)	ispF	1646862..1647335 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA40_RS07785 (PALA40_01541)	truD	1647332..1648399 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
PALA40_RS07790 (PALA40_01542)	surE	1648387..1649136 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA40_RS07795 (PALA40_01543)	-	1649169..1649804 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA40_RS07800 (PALA40_01544)	-	1649850..1650743 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA40_RS07805 (PALA40_01545)	rpoS	1650848..1651852 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA40_RS07810 (PALA40_01546)	fdxA	1652279..1652602 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA40_RS07815 (PALA40_01547)	mutS	1652669..1655236 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA40_RS07820 (PALA40_01548)	-	1655362..1656369 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684147 PALA40_RS07805 WP_003113871.1 1650848..1651852(+) (rpoS) [Pseudomonas aeruginosa strain PALA40]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684147 PALA40_RS07805 WP_003113871.1 1650848..1651852(+) (rpoS) [Pseudomonas aeruginosa strain PALA40]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653