Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA40_RS02560 Genome accession   NZ_CP110349
Coordinates   556893..557258 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PALA40     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551893..562258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA40_RS02530 (PALA40_00500) pyrR 552515..553027 (-) 513 WP_269973014.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PALA40_RS02535 (PALA40_00501) ruvX 553139..553573 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  PALA40_RS02540 (PALA40_00502) - 553573..554142 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PALA40_RS02545 (PALA40_00503) - 554191..555084 (-) 894 WP_003160914.1 energy transducer TonB -
  PALA40_RS02550 (PALA40_00504) gshB 555231..556184 (-) 954 WP_003100943.1 glutathione synthase -
  PALA40_RS02555 (PALA40_00505) pilG 556439..556846 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA40_RS02560 (PALA40_00506) pilH 556893..557258 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PALA40_RS02565 (PALA40_00507) - 557309..557845 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA40_RS02570 (PALA40_00508) pilJ 557930..559978 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PALA40_RS02575 (PALA40_00509) pilK 560039..560914 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=684135 PALA40_RS02560 WP_003084587.1 556893..557258(+) (pilH) [Pseudomonas aeruginosa strain PALA40]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=684135 PALA40_RS02560 WP_003084587.1 556893..557258(+) (pilH) [Pseudomonas aeruginosa strain PALA40]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364