Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M1S35_RS01590 Genome accession   NZ_CP096766
Coordinates   338887..339705 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 5626     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333887..344705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S35_RS01555 (M1S35_01555) - 334470..334599 (-) 130 Protein_296 hypothetical protein -
  M1S35_RS01560 (M1S35_01560) rpoZ 334638..334916 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1S35_RS01565 (M1S35_01565) gmk 334989..335618 (-) 630 WP_000015937.1 guanylate kinase -
  M1S35_RS01570 (M1S35_01570) ispH 335741..336691 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1S35_RS01575 (M1S35_01575) fimU 336861..337334 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S35_RS01580 (M1S35_01580) pilV 337328..337888 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1S35_RS01585 (M1S35_01585) pilW 337889..338890 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1S35_RS01590 (M1S35_01590) pilX 338887..339705 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M1S35_RS01595 (M1S35_01595) pilY1 339717..343571 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M1S35_RS01600 (M1S35_01600) pilY2 343584..344066 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M1S35_RS01605 (M1S35_01605) pilE 344063..344488 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=684058 M1S35_RS01590 WP_000149374.1 338887..339705(+) (pilX) [Acinetobacter baumannii strain 5626]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=684058 M1S35_RS01590 WP_000149374.1 338887..339705(+) (pilX) [Acinetobacter baumannii strain 5626]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993