Detailed information NTG0684048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA36_RS06895
• Genome accession: NZ_CP110348
• Coordinates: 1466721..1467725 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1461721..1472725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA36_RS06865 (PALA36_01365)	fghA	1461813..1462664 (+)	852	WP_033938392.1	S-formylglutathione hydrolase	-
PALA36_RS06870 (PALA36_01366)	ispF	1462735..1463208 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA36_RS06875 (PALA36_01367)	truD	1463205..1464272 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
PALA36_RS06880 (PALA36_01368)	surE	1464260..1465009 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA36_RS06885 (PALA36_01369)	-	1465042..1465677 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA36_RS06890 (PALA36_01370)	-	1465723..1466616 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA36_RS06895 (PALA36_01371)	rpoS	1466721..1467725 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA36_RS06900 (PALA36_01372)	fdxA	1468152..1468475 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA36_RS06905 (PALA36_01373)	mutS	1468542..1471109 (-)	2568	WP_079976783.1	DNA mismatch repair protein MutS	-
PALA36_RS06910 (PALA36_01374)	-	1471172..1472413 (-)	1242	WP_058151333.1	site-specific integrase	-
PALA36_RS06915	-	1472392..1472577 (-)	186	WP_088169860.1	excisionase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684048 PALA36_RS06895 WP_003113871.1 1466721..1467725(+) (rpoS) [Pseudomonas aeruginosa strain PALA36]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684048 PALA36_RS06895 WP_003113871.1 1466721..1467725(+) (rpoS) [Pseudomonas aeruginosa strain PALA36]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653