Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PALA52_RS26015 Genome accession   NZ_CP110347
Coordinates   5647369..5647968 (-) Length   199 a.a.
NCBI ID   WP_024916550.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5642369..5652968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS25995 (PALA52_05156) aroK 5643500..5644018 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA52_RS26000 (PALA52_05157) pilQ 5644030..5646174 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  PALA52_RS26005 (PALA52_05158) comL/pilP 5646228..5646752 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA52_RS26010 (PALA52_05159) pilO 5646749..5647372 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA52_RS26015 (PALA52_05160) pilN 5647369..5647968 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA52_RS26020 (PALA52_05161) pilM 5647968..5649032 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA52_RS26025 (PALA52_05162) - 5649217..5651688 (+) 2472 WP_024916551.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22288.62 Da        Isoelectric Point: 10.3054

>NTDB_id=684010 PALA52_RS26015 WP_024916550.1 5647369..5647968(-) (pilN) [Pseudomonas aeruginosa strain PALA52]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGRNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEANAKAKNGVAQGAKK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=684010 PALA52_RS26015 WP_024916550.1 5647369..5647968(-) (pilN) [Pseudomonas aeruginosa strain PALA52]
ATGGCGCGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTCGGCGG
TGTCCTGGTGGCATCGGCGGCGCTGGTGTTCCTTGGCGACCAGTATTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTGCTCGATGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCGATCATCGGTCGGGTGTTCGACCAGCTCGTACG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAGGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGATGCGTCCGAATGGCTGACCGCGCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAGCTGACCGTGCAGCAGACGCAGCCCGGCGAGGAGGCGAACGC
CAAGGCGAAGAATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

87.94

0.367