Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA52_RS26005 Genome accession   NZ_CP110347
Coordinates   5646228..5646752 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5641228..5651752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS25990 (PALA52_05155) aroB 5642344..5643450 (-) 1107 WP_058140600.1 3-dehydroquinate synthase -
  PALA52_RS25995 (PALA52_05156) aroK 5643500..5644018 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA52_RS26000 (PALA52_05157) pilQ 5644030..5646174 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  PALA52_RS26005 (PALA52_05158) comL/pilP 5646228..5646752 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA52_RS26010 (PALA52_05159) pilO 5646749..5647372 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA52_RS26015 (PALA52_05160) pilN 5647369..5647968 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA52_RS26020 (PALA52_05161) pilM 5647968..5649032 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA52_RS26025 (PALA52_05162) - 5649217..5651688 (+) 2472 WP_024916551.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=684008 PALA52_RS26005 WP_003095836.1 5646228..5646752(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA52]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=684008 PALA52_RS26005 WP_003095836.1 5646228..5646752(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA52]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGATGAAGTTCGTGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGTCCGTTCCAGCCTCCGGTGAAGATCGACCTGACGGTACGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGTACCTTCGCCCTGGTGAAAGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362