Detailed information NTG0683949

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA52_RS06750
• Genome accession: NZ_CP110347
• Coordinates: 1445814..1446818 (+)
• Length: 334 a.a.
• NCBI ID: WP_121366846.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1440814..1451818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA52_RS06720 (PALA52_01336)	fghA	1440906..1441757 (+)	852	WP_024916110.1	S-formylglutathione hydrolase	-
PALA52_RS06725 (PALA52_01337)	ispF	1441828..1442301 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA52_RS06730 (PALA52_01338)	truD	1442298..1443365 (+)	1068	WP_024916109.1	tRNA pseudouridine(13) synthase TruD	-
PALA52_RS06735 (PALA52_01339)	surE	1443353..1444102 (+)	750	WP_121501316.1	5'/3'-nucleotidase SurE	-
PALA52_RS06740 (PALA52_01340)	-	1444135..1444770 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA52_RS06745 (PALA52_01341)	-	1444816..1445709 (+)	894	WP_024916107.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA52_RS06750 (PALA52_01342)	rpoS	1445814..1446818 (+)	1005	WP_121366846.1	RNA polymerase sigma factor RpoS	Regulator
PALA52_RS06755 (PALA52_01343)	fdxA	1447243..1447566 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA52_RS06760 (PALA52_01344)	mutS	1447633..1450200 (-)	2568	WP_024916105.1	DNA mismatch repair protein MutS	-
PALA52_RS06765 (PALA52_01345)	-	1450336..1451343 (-)	1008	WP_024916104.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38261.47 Da
• Isoelectric Point: 5.0478

>NTDB_id=683949 PALA52_RS06750 WP_121366846.1 1445814..1446818(+) (rpoS) [Pseudomonas aeruginosa strain PALA52]
MALKKEGPEFDHDDEVLLLEPGIMLDELSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=683949 PALA52_RS06750 WP_121366846.1 1445814..1446818(+) (rpoS) [Pseudomonas aeruginosa strain PALA52]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTTCTGGAGCCCGGCATCATGCTGGACGA
GTTGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAGCAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTGCACTTCGCTCGTTTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGCTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCCTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCCCTTGGTCCGGACTCGGACAAGACCCTGCTG
GACACGCTCACCGACGATCGCCCGACCGATCCCTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGTATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACTCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGTTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.768	98.204	0.656