Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA52_RS02510 Genome accession   NZ_CP110347
Coordinates   552858..553583 (-) Length   241 a.a.
NCBI ID   WP_058141000.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547858..558583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS02485 (PALA52_00494) - 548325..548840 (+) 516 WP_024915697.1 glycine cleavage system protein R -
  PALA52_RS02490 (PALA52_00495) rarD 549530..550426 (-) 897 WP_024915698.1 EamA family transporter RarD -
  PALA52_RS02495 (PALA52_00496) - 550634..551608 (-) 975 WP_024915699.1 serine/threonine protein kinase -
  PALA52_RS02500 (PALA52_00497) - 551670..552428 (-) 759 WP_024915700.1 TOBE domain-containing protein -
  PALA52_RS02505 (PALA52_00498) - 552496..552816 (-) 321 WP_024915701.1 YfiM family lipoprotein -
  PALA52_RS02510 (PALA52_00499) comF 552858..553583 (-) 726 WP_058141000.1 ComF family protein Machinery gene
  PALA52_RS02515 (PALA52_00500) - 553722..554015 (-) 294 WP_024915703.1 hypothetical protein -
  PALA52_RS02520 (PALA52_00501) - 554069..554986 (-) 918 WP_024915704.1 LysR family transcriptional regulator -
  PALA52_RS02525 (PALA52_00502) - 555112..555870 (+) 759 WP_024915705.1 5-oxoprolinase subunit PxpA -
  PALA52_RS02530 (PALA52_00503) - 555947..556195 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA52_RS02535 (PALA52_00504) - 556206..557582 (+) 1377 WP_058141002.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA52_RS02540 (PALA52_00505) - 557584..558462 (+) 879 WP_024915707.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27068.52 Da        Isoelectric Point: 10.8076

>NTDB_id=683939 PALA52_RS02510 WP_058141000.1 552858..553583(-) (comF) [Pseudomonas aeruginosa strain PALA52]
MSFPLLHLSRWLLPPPACLLCAAHSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLAVVDDVLTTGATAERLSRLLRRAGATRVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=683939 PALA52_RS02510 WP_058141000.1 552858..553583(-) (comF) [Pseudomonas aeruginosa strain PALA52]
ATGTCGTTCCCGCTTCTGCATCTCTCACGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCACAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGCGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGCCGACGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAATGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCACTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCCGCCCAGCAGGGCCTGGACGCGACGGTACGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCAGTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCACGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(10-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.705

100

0.382
  comFC Legionella pneumophila str. Paris

37.607

97.095

0.365