Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA52_RS02110 Genome accession   NZ_CP110347
Coordinates   454744..455109 (+) Length   121 a.a.
NCBI ID   WP_024918009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449744..460109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS02080 (PALA52_00413) pyrR 450367..450879 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PALA52_RS02085 (PALA52_00414) ruvX 450991..451425 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PALA52_RS02090 (PALA52_00415) - 451425..451994 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PALA52_RS02095 (PALA52_00416) - 452043..452936 (-) 894 WP_003084580.1 TonB family protein -
  PALA52_RS02100 (PALA52_00417) gshB 453082..454035 (-) 954 WP_003100943.1 glutathione synthase -
  PALA52_RS02105 (PALA52_00418) pilG 454290..454697 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA52_RS02110 (PALA52_00419) pilH 454744..455109 (+) 366 WP_024918009.1 twitching motility response regulator PilH Machinery gene
  PALA52_RS02115 (PALA52_00420) - 455159..455695 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA52_RS02120 (PALA52_00421) pilJ 455781..457829 (+) 2049 WP_024918008.1 chemotaxis chemoreceptor PilJ -
  PALA52_RS02125 (PALA52_00422) pilK 457890..458765 (+) 876 WP_024918007.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13289.30 Da        Isoelectric Point: 5.1961

>NTDB_id=683936 PALA52_RS02110 WP_024918009.1 454744..455109(+) (pilH) [Pseudomonas aeruginosa strain PALA52]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSSIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=683936 PALA52_RS02110 WP_024918009.1 454744..455109(+) (pilH) [Pseudomonas aeruginosa strain PALA52]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTGGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGGCAGCTGACCAAGGACGCCGAGACCAGCTCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGTGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAAACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364